HsaINT1042114 @ hg38
Intron Retention
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4 member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr12:51496987-51504120:+
Coord C1 exon
chr12:51496987-51497124
Coord A exon
chr12:51497125-51504028
Coord C2 exon
chr12:51504029-51504120
Length
6904 bp
Sequences
Splice sites
5' ss Seq
GAGGTCATA
5' ss Score
0.94
3' ss Seq
AATGTTTCTTTTTCTTCCAGGAG
3' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTTGGCCTTGGTCTTTGTCAGGAAAGTCATGGATCTCTGTTTCTCTAAGCGAGAGCTGAGCTGGCTAGATGATCTCATGCCTGAAAGCAAAAAGAAGAAGTTGGATGATGCCAAAAAGAAGGCCAAGGAGGAAGAG
Seq A exon
GTCATAGTCCTTGCACCAACTGTATACCTGGGGGCCTCAAATTACAGAACATAGGAAGGGTCATGTGAAAAGTCAGCATGTCTGGAATCCCGAGGGTTATATTTAGGAGCTGGGAAGATTACCCCCAAAGATGTTCTCAGCTAAGAATGGATTAGGGATTCTTGCTTCTGTCTGTTCTTAATTTTTGGGTTTGACAACCACTTATTTTTTCCTTTGTTTACAATCTACTCACCAGGCTCATACCTACAATGTGAACATACAGTATGCCCTTATTAGCAGATTCAATGGCTCACATTCTTTCAAAAGGTCTAATTTGACAAATACATAAGACCCATTATTTCCTAGAATGTTTGTAATATATCTAATTGCAAATGGTGCTGTGGTTGGCACCATGCAAAGATAACTTGCATAGGACTTTCTGTCTTTTTTCATTTCCCTCAGCACTTGGCATCTTGTCATCTACACAATGGACCCTCAATAAATGGCCTATATGTGCAAAGAAAGAATGTGTAGCAAATGAAAATACCAGACCAAGAAATGAGTGAGCTGGGAAGTGTTTCCAAATACAGTTAGTGCCTAAAATAGTGTCCTTTGAAAAAACTTTTAAAAGACTTTTTTTTAGGCCAGGCATAATGGGTTATCCCTGTAATTCCAGGGCTTTTGGGAGTTGAAGCTGGAGGATTACTTGAGGCCAGAAGTTTGAGACTAGCCTAGGCAATATAATGAGACCCTGTCTCTACAAAAAAAAAAAGAAAAGAAAAGAAAAAAAATCAAAATAATTAGCTGGATGTGGTGGCACATACCTGTAGTCAGCTACTTGGGAGGCTGAGGTGGGAGGATACCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTGTGATCATGCCACTGCACTCCAGCCTAGGCTGAGTGAGATCCTATCTCAAGAAAAAAAAAAAAGATGACTTTTTTTTCCCCTAATATCTTGAACTTTAAAAATCTTGTATTTCTAAATAAGCTTCAACAATTATAAAATATAAAGTCAATGGAAGAAAACTTTAAAGAGAATATTGATAGAATTCACTACATAAAATGTGATGCTTTCAGGCATCCAAAACTCTAATCAAAATTTTAAAATAACAGATAAGTTGAGACATGTTAATATCCTTACTATTCAAATAATTCTTATAAATTAATAAGAATAATATGAAATTGAAATGAGCAATGGACATATATAATTTACGAAAAAGAAGTACAAATGACCAGTTGCCTTATGACAAAAATTTCATTCTCACTAATAATCAAAGAAATGATTGTGCAGCATCTGGATTTTATGAAATGAAAATAAATATTAAAAAATAAAAAAGAAATGAAAATTTAAGCAAGGAGAATACTTTTTTACTTGTCGAATTGGCAAAGATTTTTAAAAGATAAAAACAAGTGTTGGCAAGACTGTAATTGAAATTGGCTTCTCATACACTAAAAATAGTAATATAGGCTGGGCGCGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGTTGGATCACCTGAGGTCAGGAATTTGGGACCAGCCGGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTATAATCTAGCTATTCCGGAGGCTGAGGCAGGAGGATCGCTTGAATCTGGGAGGCGGATATTGCAGTGAGCCGAGATAACACCACTGCACTCCAGCCTGGGTGACAGAGAGAGATCCTGTCTCAAAAAAAAAAAAAAAAAAAAGAGGCTGGATGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTTGAGACCTGACCAACATGGTAAAACCCTGTCTTTACTAAAAATACAAAAAAGTAGCCAAGTATGTTGGCGCATGCCTATAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGTAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCGAAAGAACAAGACTTTGTCTCAAAAAAATAAAAATAAGAAAGATATGTGGACGTGTTTCTGACATTTTATGTGAAAAACATAGGGAATATAAAATGGAGCATACAGTAAGACTGTCAAAGAATCTCACTTTTACTAAAACATATACATATACACATACTGTACACACACACACGTGCATGTGTGCACCCCCCACACACGTGAAAAAGATTGGAAGAAAATACACCAAAATGTTTATTGTGTTGCTCTATGTCTCTCTAGTTGGTAAGATTATACATTTTTTGATTAATTTTCTTCCTCCATATTTATTGAATCCTTACTCTGTTGGTCACTGTTCCAGATACAGTAGTATACAGGACACAGACAGTCCCTGACCGACCACATGGAGCTTACATTCTCTTGGAGGAGACACTGTCAACAAGCAAACAAGTCTATATTTGTTTTCTTGGTTATAGTGCTATAATTCTACACACACACACACACACACACACACACACACACGTATATAATTTTAGGTAGTGATATGTTTTAAGAAGGTAGGGAGTGAGGGAGTTACTTTATTTAGGATGATTAGAGATGACTTCTGAGGAGACATCTGAGTAGAGACCTGAATCAAGTGAGAAGCAAATTATGAGAATATCTGGGAGTAAGAACATTCCAGGGCAGGGGTACAGAAAATGCAAAGGTCTTGAGGAGGAATGAGCTTGGTGTGTTTGAGGAACACCAAGAAAGCCAGTAAGACTGGAAGGGACAGAGTGGTAGCAGGGAGACCAGCTAGGAGGCTGGCAGCAGCTCAGGCAATAGGGGAGGGTGGCTTATGCTAAGGTAGAGGTGATGAAAGTGGCTGAATTGGGTACTTATTTTGAAGATAGAGCTGACAGGTTTTGCTAATGATGGTGGGCATGGGTGAAAGAGGAATCAAGTATGACTCTTAGATTTTTGGACTGAACAACTGAATGAATGGTTGTGCTATTTATTAAGATGGGGAAGACCAAGGAGAACAGCAGGTTTAGGAGGAAAATCAAGAGATCTCCTTTGGATGTTAAGTTCGAGGTGGCTGGTAGACATTATATTCCTTATTTTCCAAAATTCCTGAAGTAAGTACATATTTGTTAACACGTGTTACTTTATAAAATTATTTTAAAAGCTAAATGAAATAAAAGAAAAAAGTGAAGACTTTTTCTCCACCTCATAGCCAACATTCATGTTCATTTCTTTATGTTGTTTTCAATTTTTTAACATAGTTTTCATATAACTATGATAATTATATAATTGTGAGTTTGTATTTATATATATAGCACATATATATTCTGATTTTTCCCCTCAACCTGATTTCATAAGACACTTTCATGTTTCTATTTGTATCATGATATTTTTTAAATGGATGTATAATGTTCTATAGTATTATCTCATACTTAATTTAAATATTTTTCCTTTGTTAAAATTTTTAGTTGTTTTATATTACTTTGAACATCTTTGTACAGATAGTTTTTTCTCTGTAATTATTTTCTTTAAATTAGTGGGATTATTTTCTTTTCTTTTTTTTTGAGATGGAGTCTCGCTCTTTCGCCCAGGCTGGAGTGCAGTGGCGCTATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGTCGGGACTACAGGCTCTCGCCCCTGCGCCTGGCTTTTTTTTTTTTTCTTTCTTTCTTTCTTTATTTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAACGTGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGCGTGCTGCACCCATTAACTCATCATTTAGCATTAGGTATATTTTTAGTAGAGACCGGGTTTCACGGTGATAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCCGGCCAGATTATTTTCTAAGAAAACATTTTATTATGGATTTCTAAAAAAAGTTATTTTAGATTCAGGGCATGTGCAGGTTTGTTACATGGGTGTAGTGAGTTATGCTGAGCTTTGGGCTTCTAATGATCCTGTCACCCAAGTAGTGAACATAGTACCCCATAGGTAGTTTTCCAACCCTTCCCCTGTCTTCCGCCTTTTGGAGTCCCCAGTGTTTTTTGTTCCCATCTTTGTGTCCATGTGTACCCAATGTTTAGCCTCCACTTATAAATGAGAACATGCATTATTTGGTTTTTTGTTCCTGCGTCAGTTCACTTAGGGTACTGGCCTCCAGCTGCATCCATGTTGCTGCAAAGGACATAGTTTTGTTCTCTTTGTGGCTGCGTAGTATTCCATGGTGTATACATACTACAGTTTCTTTATTCAATCCACCATTGATGGGCACCTGGGTTGATTCCATTTCTTTGCTATTGTTAATAGTGCTGCAATAAATATATGAGTGCAGATGTCTTTTTGACAGAACAATTTATTTTCCTTTGGGTATATACCAAGTAATGGGATTGTTGGGTCTAATGCTAGTTCTATTTTTAGTTCTTTGAGAAATCTCCAAACTGCTTTCCACAGGGGCTGAACTAATTTGCATTCCCACCAACAGTGTAGAAGTGTTCACTTTTCTCCACAACCATGCCAAAGTCTGTTATTTTTTGACTTTTTAATAATAGTCGTTCTGACTGATGTGAAATGGAGTCTCTTTGTGGTTCTGATTTGCATCTCTGATGATGCATGATGTTGACCAGTTTTTAATATGTTTGTTGACTGCTTGTATGTCTTCTTTTAAGAAGTGTCTGTTCATATCCTTTGCCCTTTCGCTTCTATGCACCAATAACACCCAGGCTGAGAGTCAAACCAAGAACACAATCCTGACTACAGTAGCCATAAAGAAAATGAAATACCTGGGAATACACCTAATCAAAAACATGAAAGCACTCTCTAGAGGGAGAACTACAAAACATTGCTGAAAGAAATCAGAGATGATTCTCTGAAAAAGAAGTCAGATTAGAAATGATTCTCTGAAAAAGAAATCATCTCTGATTTCTTTCAGCAGTGTGTTTTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTTGCTCTGTCGCCAAGGCTGGAGGGCAATGGCATGATTTCAGCTCACTACAACCTCCTGCTCCTGGGTTCGAGCGATTCTCCTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGTACCTGCCATCACGCCTGGGCTAATTTTTGTATTTTTAGTAGAGACAAGGTTTTGCCATGTTGACCAGTCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTAAGGCATGAGCCACTGTGCCTGACCTCTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTTAAAAACTGGTCAACATCATGCATCATCAGACATGCAAATCAGAACCACAAAGAGACTCCATTTCACATCAGTCAGAATTACTATTATTAAAAAATCAAAAAGTAACAGACGTTGGCATGGTTGTGGAGTGCAGTGGTGTGATCTCGGCCGACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTTCCTAGTAGCTGGAACTACAGGCATGCACCACCACGCCCGACTAATTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTTGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCTCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGGTTTCACCGTGTTAGCCAGGGTGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCACCCAGCCAGCCTGACGTCTTTCAGCAGTGCTTTGTAGTTCTCTTCGTAGAGATCTTTTACCTTATGGATTATTATTATTTTTTTATTTTTTATTTTTATTTTTTTTTTGAGACGGAGTCTCACCCTGTTGCCCAGGCTGGAGTACAGTGGCGCAATCTCAGCTCATTGCAACCTCCGACTCCCGGGTTCACGCCATTCTCCGTCTCAGCTGGGACTACAGGCGCCCGCCACCACACCTGGCTAATTTTTTATATTTTTAGTAGGAACGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACTTCATGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCTACCTTATTGATTATTTTAAACCTACAAAGGTAGAAAGAAAAGGCTTCTTATTGTTAATAATTTGTTTATTTGAATTAGCATCCAAAGAAGAGCCATATATTGCAATTGGTTGATATCTGTCTTAAATCTTTTTAGGGGTTCCCTTTCCATTTTTTTAAAGTTGAAGAAACAGGGTCTTTGACCTCTAGGGCTTCTCACCATTTAGATTTTGCTAAATGTGTCCCTTGGTGTCATTTAAAATGTTCTTCTGTCTGCTATATTTGTAGTAAATTGGTCATTAGCTCTAGAGGTTTACTCAGATTGACATTTTCTTTTTTTCTTTTTTGAATGCCATTCCACATGTATAAATATCTGGTTGTCTCTCATTTTGTGGTAACTCAAGTCTATGAAAGAACCTAATTATATTCTTTATAATAAATGCACAATGAAATTAGGTAGAAATTGTGGTAGAAGAATGGGCTGGTGAACTTATGGTCTTACTTGGTCCAAGATATAATAATGTTTCTTTTTCTTCCAG
Seq C2 exon
GAGGCTGAGAAAATGTTAGAAATTGGGGGAGACAAGTTTCCCTTAGAGAGCAGGAAGTTACTAAGTAGTCCTGGAAAGAACATCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438:ENST00000453097:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains