GgaINT0001051 @ galGal3
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
NA
Coordinates
chrE22C19W28_E50C23:321422-321821:+
Coord C1 exon
chrE22C19W28_E50C23:321422-321527
Coord A exon
chrE22C19W28_E50C23:321528-321682
Coord C2 exon
chrE22C19W28_E50C23:321683-321821
Length
155 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCTTTGTTTCTTTGTTTTAAAAA
3' ss Score
2.6
Exon sequences
Seq C1 exon
AAATCTTAGATGAGGACAACAGCATAGCTGCTATGTACCAAGCAGTTGGGGAACTTCCTCGGGCCAATAGGGACACCCTGGCTTTTCTCATGGTTCATCTGCAGAG
Seq A exon
GTATGTTCAGATGGAGTGATGGTTCTGGAAGGAGGATATTGCCATTGGTGTGTTCACTGATAGTCTCCTGCTGCCTGTGAGTGAAAAGTCTTGGGCCAGGAGCATGAAGTGAGAGATAAAGGGGGGAACTCCTTTTCTTTGTTTCTTTGTTTTAA
Seq C2 exon
AAATAGAGTGGCTCAGAGCCCTGACACCAAAATGGACGTTAACAACTTGGCCAAAGTCTTTGGCCCCACGATAGTTGCCCATGCAGTGCCTGATCCTGACCCGATGACGCTCCTGCAGGACACAAAGCGGCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(22.9=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(21.6=70.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGATGAGGACAACAGCATAGC
R:
CTTGGGTTGCCGCTTTGTGTC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]