MmuINT1029456 @ mm10
Intron Retention
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99623927-99624343:-
Coord C1 exon
chr15:99624238-99624343
Coord A exon
chr15:99624060-99624237
Coord C2 exon
chr15:99623927-99624059
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
TAATATAATCTTTTATTCAGAGT
3' ss Score
5.58
Exon sequences
Seq C1 exon
AGATAACAGATGAAGACAACAGCACAGCCGCCATGTACCAGGCTGTCAGTGAGCTGCCCCAGGCCAACAGGGACACGCTAGCCTTCCTTATGATCCACCTACAGAG
Seq A exon
GTTAGTACAGCGGATGCTTAGTCTGAGAGCTAGGGAATCTTCCAAGGAGAAGAGTGTGTGGACAGTGAGTTGTTTTTTCTAGAATGTATATTTTGGTGTATATTTAAGAGGAATAATATGTTTCTTTTTTCCCCCCACCTCCCCTGAATAATGTTTCTTAATATAATCTTTTATTCAG
Seq C2 exon
AGTGTCTCAGAGTCCAGACACTAAGATGGATATTGCCAATCTAGCTAAAGTCTTTGGCCCTACAATAGTTGCCCATACTGTGCCCAATCCAGATCCAGTGACAATGTTCCAGGACATCAAACGTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015:ENSMUST00000171702:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(23.2=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(20.5=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGAAGACAACAGCACAGC
R:
CTTGAGCTGACGTTTGATGTCCT
Band lengths:
234-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types