GgaINT1023216 @ galGal4
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:341457-341856:+
Coord C1 exon
chrLGE22C19W28_E50C23:341457-341562
Coord A exon
chrLGE22C19W28_E50C23:341563-341723
Coord C2 exon
chrLGE22C19W28_E50C23:341724-341856
Length
161 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTCTTTGTTTTAAAAATAGAGT
3' ss Score
5.64
Exon sequences
Seq C1 exon
AAATCTTAGATGAGGACAACAGCATAGCTGCTATGTACCAAGCAGTTGGGGAACTTCCTCGGGCCAATAGGGACACCCTGGCTTTTCTCATGGTTCATCTGCAGAG
Seq A exon
GTATGTTCAGATGGAGTGATGGTTCTGGAAGGAGGATATTGCCATTGGTGTGTTCACTGATAGTCTCCTGCTGCCTGTGAGTGAAAAGTCTTGGGCCAGGAGCATGAAGTGAGAGATAAAGGGGGGAACTCCTTTTCTTTGTTTCTTTGTTTTAAAAATAG
Seq C2 exon
AGTGGCTCAGAGCCCTGACACCAAAATGGACGTTAACAACTTGGCCAAAGTCTTTGGCCCCACGATAGTTGCCCATGCAGTGCCTGATCCTGACCCGATGACGCTCCTGCAGGACACAAAGCGGCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(23.2=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(20.5=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGATGAGGACAACAGCATAGCT
R:
CTTGGGTTGCCGCTTTGTGTC
Band lengths:
234-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]