GgaINT0001082 @ galGal3
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:134864-135718:-
Coord C1 exon
chrE22C19W28_E50C23:135609-135718
Coord A exon
chrE22C19W28_E50C23:134995-135608
Coord C2 exon
chrE22C19W28_E50C23:134864-134994
Length
614 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCTGTCTTTGGTGTTGCAGATG
3' ss Score
10.49
Exon sequences
Seq C1 exon
ATGACTTGCCCAGGAAGCGGCTCTCTCAGATCTATAAACCACCTACGTCTGAAATGTTAGCATATCTAGATTTTAGTGTTTCCACAACGGGCATGCTTACAGGAGTGAAG
Seq A exon
GTACAGTAAAATGCTTTTAGAAAATGAATTTTTTTGGTGTTGTGTCTTCGGCTGATAATCCAGACCAGCTCTCCTGTCTACCTCCACCAGAACTGGCTTTGTAGCTTAAAGGCTGTACTTTTCTGTGAGTAAAGCTATAAATTCCCCGCATGTAATGCAGTATGACTTCAGGCTGAAGAATCAGCTCTGCTATATAGAACGAGAGGTCTCTACAGCGGGCATTCTGCTGCCTCCCACCAGAGAGCAGGCTGATGGGAGAGCAGTGGGTGTGAGGAGCACAGCTGTGTGCTTTTGCTTCCCCCCCAACACTAAGAGCAAAATAGGAATGCAGTTGACAGAGAAGATGATATGAAACTAAAAAATGAAAGCTTTAGTGTGTCATTAATAATCAGCTCTGTTTGGAGTCTGAGAAACCCAAGACCTTTCAGCAGTAGCTCTTGTCACAGTTTCTGGCTCATATGGTTCTGCATCTGCTGTGGGAGATAAGGGAAGAAGAAATACCGGTTTACTGAGAAATGCTATCCAAGGCAGCTGTCATTCTTACCTGCCTGTCTTGGTGAAATCCTATTGTGATGTGAGATTTCAGCACAGTTTCTCTGTCTTTGGTGTTGCAG
Seq C2 exon
ATGTCCCACGCAGCAGTGAGTGGCCTTTGCAGGGCCATCAAGCTTCAGTGTGAGCTCTACTCCTCACGGCAGATTGCCATTTGTCTTGACCCCTACTGTGGACTAGGGTTTGTGCTCTGGTGCCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTTGCCCAGGAAGCG
R:
CAAAGGCACCAGAGCACAAAC
Band lengths:
238-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]