MmuINT0049589 @ mm10
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100198941-100199590:+
Coord C1 exon
chr15:100198941-100199050
Coord A exon
chr15:100199051-100199459
Coord C2 exon
chr15:100199460-100199590
Length
409 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGTGTCCCTTGCTTCACAGATG
3' ss Score
10.97
Exon sequences
Seq C1 exon
ATGACTTACCCAGGAAACGGCTACCTCAGCTGTATAAACCGCCCACTCCTGAGATGTTGGCGTATCTTGATTTCAGCGTTTCCACAACTGGCATGCTCACAGGGGTGAAG
Seq A exon
GTAAGGCAGTAATGCCTGCTTTGTGCTGCTGAGCTGCCAGGCTGCAGTACACAGCTGTGACCACTGCTGGGGACCTCAGCTGGGGAAGGCCAGAGGCTGTGCCAGATGCCAGTGGGTGGATCAAGTGTCCTGGCTATATTTAAATCTGAGCACCAGCTCTTCCGGAGAAAGTTATCCCAGAGGATTTGCACGATGAAGTGCTGGGGCCAGACACTTTAAATAGTAAAGTCAGTTTGCAGCCTTCACTTGGTCGCCATGACACTGTCAACTATGGAGTAGAAACCTGTCTTCTTAGGCTATGAAGCAGTTAAACCCACACGTGAAGAGAGAGTTGGGGGAGCTGAGGCTGGTGAGCGCAGCTTCTCTGCCCAGGGTGACAGTCCGTCCTTCTGTGTCCCTTGCTTCACAG
Seq C2 exon
ATGTCCCACTCTGCAGTCAATGCTCTCTGCAGAGCCATCAAGCTGCAGTGCGAATTGTACTCTTCCCGGCAGATCGCCATCTGCCTTGACCCTTACTGTGGACTTGGCTTTGCACTCTGGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026:ENSMUST00000100203:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTACCCAGGAAACGGCT
R:
ACCAGAGTGCAAAGCCAAGTC
Band lengths:
230-639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types