GgaINT0002111 @ galGal3
Intron Retention
Gene
ENSGALG00000003008 | NCAN
Description
NA
Coordinates
chrUn_random:26551628-26552002:+
Coord C1 exon
chrUn_random:26551628-26551802
Coord A exon
chrUn_random:26551803-26551874
Coord C2 exon
chrUn_random:26551875-26552002
Length
72 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
CCACCCAGCCTGTCCCGCAGGTA
3' ss Score
6.52
Exon sequences
Seq C1 exon
GTGTCGTCTTCCACTACCGCCCCGCGGGCGCTCGCTATGCACTGACCTTCGCTGCTGCCCGGCGTGCCTGCATGGACAACTCGGCCGTCATCGCCTCTCCCCAGCACCTGCAGGCCGCCTTCGAGGACGGCTATGACAACTGTGATGCAGGCTGGCTGGCCGACCAGAGTGTGCG
Seq A exon
GTAAGTGCGTGGCACGGGCACCCCTCACCGCGGGTGGCACGGAGCCGGGCACCCACCCAGCCTGTCCCGCAG
Seq C2 exon
GTACCCCATCACACTGTCCCGACCCGGCTGCTATGGGGACCGCAACAGCCTCCCCGGGGTGCGCAGCTACGGCCAGAGGGAGCCCGGCGAGCTGTACGATGTCTACTGCTACGCACGGGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003008:ENSGALT00000035919:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PU(60.4=98.3)
A:
NA
C2:
PF0019312=Xlink=PD(38.5=72.5),PF0019312=Xlink=PU(4.3=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGCTATGCACTGACCTTC
R:
CGGGACAGTGTGATGGGGTA
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]