GgaINT0002275 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:54063864-54064298:-
Coord C1 exon
chrUn_random:54064165-54064298
Coord A exon
chrUn_random:54064064-54064164
Coord C2 exon
chrUn_random:54063864-54064063
Length
101 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CCTCACCCCTCTGCCCGCAGGGC
3' ss Score
11.88
Exon sequences
Seq C1 exon
ATGAGAACACGCCGGCCATCCTGCAGCAAGCGGCCCTTCCCCTGCTCACCAACGCGCAGTGCAAGCAGTACTGGGGCTTCCGCATCTACGACGTGATGGTGTGCGCCGGGGCCGACGGATCCTCCTCCTGCATG
Seq A exon
GTGGGTGCCCCGTGCCCCAAAGTGCGGCCCCCGAGCCCCCGCCTCCCCGTGCCCGCGGCCCCCCCGGCTCCGTACCCGCATCCTCACCCCTCTGCCCGCAG
Seq C2 exon
GGCGACTCCGGGGGCCCGCTGGTGTGCCAGAAGGACGGCGCCTGGACGCTGGTGGGCATCGTCTCGTGGGGCAGCAGCACCTGCTCCACCTCTACGCCTGGTGTGTACGCCCGTGTCACCAAGCTCCGCGAATGGATCGACTCCGTGCTGGCGGCCAACTGAGGCCCCAAATAAAGTTCCACTCCCACAACATGTCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038:ENSGALT00000000051:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(28.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(28.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCTACGACGTGATGGTG
R:
AGGACATGTTGTGGGAGTGGA
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]