RnoINT0043254 @ rn6
Intron Retention
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43906292-43906994:-
Coord C1 exon
chr19:43906861-43906994
Coord A exon
chr19:43906506-43906860
Coord C2 exon
chr19:43906292-43906505
Length
355 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAG
5' ss Score
3.5
3' ss Seq
TCCTTTACCTTTCTCTGCAGGGT
3' ss Score
11.75
Exon sequences
Seq C1 exon
CCCTCAAGACCCCTGAGAAGCTGCAGCAGGCCGCCCTGCCCATCGTGTCCGAGGCTGACTGCAAGAAGTCCTGGGGTTCCAAGATCACCGATGTGATGATCTGCGCAGGCGCTAGCGGCGTCTCTTCCTGCATG
Seq A exon
GTACAGCCTCCCACTCCCGACCCACTCATAGACTGCGTAACCTGGTCAGGCTAGCGGGGAGCACAGAGCCCGGAAGAGGATGGGCTAAGGCTAAGAGACACTCCTAGGAGGCACCTCTGCCCAGACTGGCGCTGTACTGCGCATACGGAACCCACTCTTGTCCCCAGCCCTGTGAGCTGTGTGTGTCTCTTCCTCACAGAGGGAAGATATGGGTGTAGGTCCCCTCTAGGAGTACAGGAGCACAGCTGGGGCTGTCAGTGAACCCCAAGGAACTGCCCTACACTTTGCCTCGCACCTCACCAGGTGCAGGTACCCTTGACAGGCTCGAAGACAAGTCCTTTACCTTTCTCTGCAG
Seq C2 exon
GGTGACTCCGGTGGCCCCCTCGTCTGCCAGAAAGATGGAGTCTGGACCCTGGCAGGCATTGTGTCCTGGGGCAGTGGCGTCTGTTCCACTTCCACTCCTGCTGTGTATTCCCGAGTCACAGCCCTCATGCCCTGGGTTCAGCAGATCTTGGAAGCCAACTGAGTCCGTGGTTCTTGCCAACCCCCCTCTGAGCATCTACAATAAAAATCATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068:ENSRNOT00000026017:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAAGACCCCTGAGAAGC
R:
ATTTTTATTGTAGATGCTCAGAGGGG
Band lengths:
342-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]