HsaINT0043007 @ hg19
Intron Retention
Gene
ENSG00000168928 | CTRB2
Description
chymotrypsinogen B2 [Source:HGNC Symbol;Acc:2522]
Coordinates
chr16:75237994-75238804:-
Coord C1 exon
chr16:75238671-75238804
Coord A exon
chr16:75238221-75238670
Coord C2 exon
chr16:75237994-75238220
Length
450 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ACTTCCTCTCCTTCCTGCAGGGT
3' ss Score
12.66
Exon sequences
Seq C1 exon
CCAACAAGACCCCTGACAAGCTGCAGCAGGCAGCCCTGCCCCTCCTGTCCAATGCCGAATGCAAGAAGTCCTGGGGCAGGAGGATCACCGACGTGATGATCTGTGCCGGGGCCAGTGGCGTCTCCTCCTGCATG
Seq A exon
GTGAGGCTGGCCCTGCCCAGGCCCTGGCCAGGCGAGCGGGGTGCAGGGGAGGTCTGGGCTTTCCACCCCTCTCTGCTCTCATCTACTAACCCCACACCCTCCTGGGGCCCAGTGAGGGCCAGGCCTTGGGGTCACAGCCGCCCATGAGGGTTCCTCCAGGCCATGCAGCTGAGGCTGCCCCTGGGGACTTCCTTGCAGCCCTGTGAGCTGGAGGTTTGGAGAGATGGATGGTGCCCCGGCTTAGAGAGGGAAGCCACCTGCCCCAGCTCCCTCCAAGAGTGCATGGCAGAGTGGGGGCTGCCATGTGAACCCAGATCTCAGGACCCCGGCACAGCCCCTATGCCCATGCTTACCATTTCTCCGCACCCCTCCCTAGACTCCACCAGGTCAGGGTCCCCTAGGCCCTGGCACCCCTTTCAGGCCTAGAGATACTTCCTCTCCTTCCTGCAG
Seq C2 exon
GGTGACTCTGGAGGCCCCCTGGTCTGCCAGAAGGACGGAGCCTGGACCCTGGTGGGCATTGTGTCCTGGGGCAGCCGCACCTGCTCTACCACCACGCCCGCTGTGTACGCCCGTGTCGCCAAGCTCATACCCTGGGTGCAGAAGATCCTGGCCGCCAACTGAGCCCGCAGCTCCTGCCACCCCTGCCTTAAGATTTCCCATTAAATGCATCTGTTTAGAAGCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168928-CTRB2:NM_001025200:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGACCCCTGACAAGCTG
R:
CAGGGCTTCTAAACAGATGCA
Band lengths:
358-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)