DreINT0178846 @ danRer10
Intron Retention
Gene
ENSDARG00000093844 | zgc:136461
Description
zgc:136461 [Source:ZFIN;Acc:ZDB-GENE-060519-7]
Coordinates
chr7:34797880-34798330:+
Coord C1 exon
chr7:34797880-34798013
Coord A exon
chr7:34798014-34798102
Coord C2 exon
chr7:34798103-34798330
Length
89 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTATATTTTGCCTGTTTCAGGGT
3' ss Score
10.56
Exon sequences
Seq C1 exon
CTCCTGATACCCCTGCCCTGCTCCAGCAGGCCGCTCTGCCTCTGCTGACCAATGAAGACTGCAAACGCTTCTGGGGAAACAAAATCACTGATCTAATGGTCTGTGCTGGAGCATCTGGTGCTTCTTCCTGCATG
Seq A exon
GTAAGTCCTTCTGTTTTTCTCAGTTTACCTCTCTATTTGTCAAGTTTTCAAACACGGTATATATCTGACTTATATTTTGCCTGTTTCAG
Seq C2 exon
GGTGACTCTGGTGGTCCTCTGGTGTGTCAGAAAGATGGAGTCTGGACTCTGGTTGGTATCGTGTCCTGGGGTAGCAGCGTTTGCTCCACCAGTTCTCCCGGTGTTTACGCCCGCGTCACCAAGCTCCGTGCCTGGGTTGACCAGACCATCACTGCAAACTAAATCACCAAGCTAATGTTCATGGTCATAATGTTCATCAATAAAGCTTTATTTTGAAAAAAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093844:ENSDART00000022139:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCTCTGCTGACCAATG
R:
CTGCTACCCCAGGACACGATA
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]