GgaINT0002482 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:60561656-60562541:-
Coord C1 exon
chrUn_random:60562379-60562541
Coord A exon
chrUn_random:60561767-60562378
Coord C2 exon
chrUn_random:60561656-60561766
Length
612 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCCTGTTTCTGTCATTGAAGCTC
3' ss Score
6.09
Exon sequences
Seq C1 exon
TTGGCTGTTCCCAGCAAGGAGCCTCTTTGCTTGCAGGAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
Seq A exon
GTGAGGGCTTTGCTGCCTTTCCTCCTCGTTAGCTCTGCTTTGGTTGTGCTGAATGAGCCTCTGCATGACGGGCATTGAATAACTGCCATGCAGTTACATATTGACTAACACCACTGTGACAGCAACAAAGGAAACACAGAGTAGCATGAGTTTCAGGAGGCCTTCTTGTGCTCAGCACTGTGATAAAAGCCCCAGAGTCAGTGCTGGCTCGTAAGCAGCAGCAGGAAGGGGGATGATCAGTTTCCTACAAACAGCCCTTGTGTTGTTGCATTGCCTGATGCCACCAGCTCCAACTAAGAGATGACTCGCTGGTTACTCCTTTAGAATTTAGGATTTTCCATTCAAATGCCATAAATATTTTGATGCCATGCTCACTGATATATTGTAAGCAAGTAAGCATGCTGTTGTAATGTTAATTTTAAAGCAAATATCCCTTCATACTGTCTAGAGATGTAAAAGCTTTCTTTGCTCCAAAGGGAGCTGTGGCCCCAGTGTCATTCAGGCCCAAATGGTGCTTTCTCCCTTGGGGAGGGAAACACAGTGGAGATGTTGAACAGTCACTGTGCCTCATTGATGGAAATGCTCTCATCTCCCCTGTTTCTGTCATTGAAG
Seq C2 exon
CTCCACTTCCAGCCCCCAAACCCGGGCTGATCTCCGTGCTTGAAGGAGGGGAAGACCCCTGGATCCCAGATGTGCGTAGCCCTGAGGCCGTGCCAGGACACCTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021992:ENSGALT00000035534:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=75.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCCAGCAAGGAGC
R:
CCTCAGGGCTACGCACATCT
Band lengths:
246-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]