GgaINT0002594 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:33240651-33241484:+
Coord C1 exon
chrUn_random:33240651-33240959
Coord A exon
chrUn_random:33240960-33241169
Coord C2 exon
chrUn_random:33241170-33241484
Length
210 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGG
5' ss Score
7.47
3' ss Seq
CTCCATCCTCCTCTGTCCAGAAT
3' ss Score
7.19
Exon sequences
Seq C1 exon
GATTTGTCCGTCTGGTCGGAGGGGACAGCCGCTGCTCAGGACGAGTGGAGATCAATGATGGGGATGGGTGGAAATCTGTCTGTGACTCACACTTTAGTGCCAAAGCTGCTGATGTGGTCTGCAGAGATCTTCAGTGTGGCAGAGCCCTGCCCGTCACCAGAGCAAGTCCCTCTGGAGAAGGGACCGGTCCCATCTGGGACAGAGAGCTGCAGTGTGTGGGGAATGAATCCACCCTCTCCTCCTGCCCCACGGGGACTCCTCAGGACCAGCCCTGCACCCAGACAAGCACTGCTGCCGTCAGCTGCACAC
Seq A exon
GTAAGGGCTCAGGGAAGGCTGTTGGATACTGAGTGTGTGCCAGGGACAGGGACAGGGCTGTGTCGAGTGTGAGGTCAGGAGGGTGATGTGGTATTCTGTAGCCCTAAGGCAGTGCTGAAGGAGGAGGCTTCATGTTGTCCCTTTGGCCTCTCCTCCATCTCCTGAGGGAACGAGAGCACAAATCACTCCCCTCCATCCTCCTCTGTCCAG
Seq C2 exon
AATTCACAGGGCTCAGGCTGGTGAATGGCAGCACGGCGTGCATGGGCAGGGTGGAAGTGGAGGTGCAGGGAACATGGGGCACCCTTTGTGCCTCCCGCTGGGACCTCTTGGACGCCCACGTTCTCTGCCATCACCTCGGCTGTGGGTTTGCGGTGTCCGTTCCTGAAGGAGGGCATTTTGGGAGAGGAACCGGCCCGGTCTGGAGTGACTCGTTCCATTGTGAGGGGACTGAGTCCAGCCTGGATCAGTGCCCGGTGACCGCCCTGGGGGCCTCTCCGTGCTCCCATGAGAACGATGCTGCTGTCATTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022257:ENSGALT00000020541:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTGTGTGGGGAATGAA
R:
GGTTCCTCTCCCAAAATGCCC
Band lengths:
294-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]