GgaINT0002704 @ galGal3
Intron Retention
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30294817-30295869:-
Coord C1 exon
chrUn_random:30295741-30295869
Coord A exon
chrUn_random:30294915-30295740
Coord C2 exon
chrUn_random:30294817-30294914
Length
826 bp
Sequences
Splice sites
5' ss Seq
GCAGTACGT
5' ss Score
6.49
3' ss Seq
ATTCCATACTGATTCTGTAGGGC
3' ss Score
6.68
Exon sequences
Seq C1 exon
GGAAATCGGTAGCTTTGCCATCTGGTGTAAGAAAGGAGCCCTTCCCCAATGCAGCCCTCCTCCTGTCCCCAAGCCCAGGACAGTCAGCCTGGGGCTGAAGCAGCTCTCGTTGGCCGACTCTGAACAGCA
Seq A exon
GTACGTATACATCGACCTCATCTACTCCTACCTGGAGCTGGGAGCAGGTGCTGCTGCATGCTGTTAAGGCTTTGTGGCTCATTACCTGTTAATGAGGGTCAGCTGTGTGCTGATACAATTAGCAGTGTCCAAATGAGGGGCACCTGGGGAGAAACAGCTGCAAGAAAACAGTCTGAATTGGGGCTGACCTGATGGGAAAGAGCTCTGTGGGGAAGGACCTGAGGAGTCCTGGTGGCCAAGAAGGCCAATGGGATCCTGGAGTGCATTGCCCAGAGTGTGGCCAGCAGGGTGAGGGAGCTGCTCCTCCCCTCCTCTGCTCTGCCCTGGGGAGGCTCCATCTGGAGCAGTAGGCCCAGTGCTGGGCTCCCCAGTTCAGGGATGATGGGGAACTGAGCCCAGCAGAGGGTGCAGAGATGGTGGGGGCCAGGAGCACCTCCTGATGGGGACAGACTGAGAACCCTGGGGCTGTGCAGCTGGGGAGGAGAAGGCTGAGAAGGGATGTGATCAGTACTGCTCAATATCTGAAGGGTAGGAGACAGGAGGATGGGGCTGGGCTGCATTTGGTTGTGCCCAGTGATGGGACGGGGGCACAGACCGGAGCTTTCCACCTGAACAGGAGAGAAAAGTTGTGTGGTGAGGGTAGCAGATCCCTGGCACAGCTGCCCAGAGAGGTGGTGGGTTGTCCTTCCATAGAGAGATTCGGACCTACTGGGATGTGACCCTGGGCACTGTGCTGTAGGGAACTGCTTTAGGGGAAGTCAGACTGAGGGAGCTCCAGAGGTCCCTTCAGCCCCTGTGGATCTTTCATTCCATACTGATTCTGTAG
Seq C2 exon
GGCACCAGGGAAGCCCGTGGCTCAGTCTGGCTCCAGGCATGCATCGTTCACACTGCACAACTCAGCTGATGATGGCTCCAGCATCTACAACCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433:ENSGALT00000029792:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.559
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(17.3=100)
A:
NA
C2:
PF102404=DUF2464=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCGGTAGCTTTGCCAT
R:
AGGTTGTAGATGCTGGAGCCA
Band lengths:
222-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]