RnoINT0095884 @ rn6
Intron Retention
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19976225-19976534:+
Coord C1 exon
chr16:19976225-19976344
Coord A exon
chr16:19976345-19976427
Coord C2 exon
chr16:19976428-19976534
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACTGTCCCCTGCTTCCCAGCAA
3' ss Score
5.45
Exon sequences
Seq C1 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAAGAAATCCAAAGCCCCAAAGCTGGTGCCCAAGCCCGGCACACTCAGCCAGGACATGCGAGGCCTCTCACTGGACCAACCCAAAGAGCCCAG
Seq A exon
GTGAGGCCCAGGCTCCCCCACGGACAGATGGGCCAGGAGGAAGACTTCAGGCCTGACTGACATCACTGTCCCCTGCTTCCCAG
Seq C2 exon
CAAAGGTAGCCACCCAGAGCGGACACTGTCCAGACTGGGCTCTCGGGCTTCCACCCTAAGGAGGAACGACTCCATCTATGAGGCATCCAGTCTCTATGGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949:ENSRNOT00000024413:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.432
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(15.9=100)
A:
NA
C2:
PF102404=DUF2464=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGAAATCCAAAGCCCCA
R:
GGAGTCGTTCCTCCTTAGGGT
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]