GgaINT0002801 @ galGal3
Intron Retention
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27618958-27619574:-
Coord C1 exon
chrUn_random:27619308-27619574
Coord A exon
chrUn_random:27619090-27619307
Coord C2 exon
chrUn_random:27618958-27619089
Length
218 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ACCCCTGCTTTCCTTTGTAGCCC
3' ss Score
11.21
Exon sequences
Seq C1 exon
CTAAAGCTGCAGGCCCGGCTGAGAGTGCGCCTGCCCACCATCCCCATCACCAAGCCTCACACCATGAAGCCAACCCCACGCCCAACGCCCATCAGGCCTACGATGTCCCCCATCGTGTCAGGTGCCCGACGGAGGCGTGTGCGCTGCCGGAAATGCAAGGCCTGCATGCAAGGCGAGTGTGGCATGTGCCACTACTGCAGGGACATGAAGAAGTTTGGTGGACCTGGTCGTATGAAGCAGTCCTGTGTCCTCCGGCAGTGCTTAGCG
Seq A exon
GTGAGTCTGCGCTCTGATCCCATTCACCAAAGACTGCTACAGTCCAGCAGCAGCTCTGTGTGGCTGACCATGGTCAGGGAGAGGAAGGATTGCTCAGGGTTGGTTCCTGCGGGAAGGATTGGGCTCTTTCCCATTGTTTGTGTGGCAGAGAGAGGAGGAGGAAAAGATGGAAAAACTGCCCCACTTTGCCCTGGTTTCACCCCTGCTTTCCTTTGTAG
Seq C2 exon
CCCAGGCTGCCTCACTCGGTCACATGTGCGCTTTGCGGGGAGGTGGATCAGAATGAGGACTCGCAGGACTTTGAGAAGAAGCTCATGGAGTGCTGCATCTGCAATGAGATTGTTCACCCTGGCTGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286:ENSGALT00000021696:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0200815=zf-CXXC=WD(100=52.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGCCTCACACCATGAA
R:
TCAAAGTCCTGCGAGTCCTCA
Band lengths:
294-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]