HsaINT0084997 @ hg38
Intron Retention
Gene
ENSG00000173120 | KDM2A
Description
lysine demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr11:67245189-67246116:+
Coord C1 exon
chr11:67245189-67245458
Coord A exon
chr11:67245459-67245984
Coord C2 exon
chr11:67245985-67246116
Length
526 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CTATCTTTGTCCTCTTGTAGCCC
3' ss Score
9.82
Exon sequences
Seq C1 exon
CTTAAATTCCCCACTCGGCCAAAGGTGCGGGTTCCTACCATCCCCATTACGAAGCCTCACACTATGAAACCAGCTCCACGGTTAACACCTGTGAGGCCAGCTGCTGCCTCCCCGATTGTGTCAGGAGCCAGACGGAGACGAGTGCGATGTCGAAAATGCAAAGCCTGTGTGCAAGGAGAGTGTGGTGTTTGCCACTACTGCAGAGACATGAAGAAGTTTGGGGGGCCTGGACGCATGAAGCAGTCCTGTGTCCTCCGACAGTGCTTGGCA
Seq A exon
GTGAGTGATCTGCTGGGTAAAGAATTTTGGGGAGGGGTGGCAGTGCCAAAGGAACTGAAATACATATAGTGTAGAGTTAAAGAGACTTCAGAGTTGGAAAGAAAAGGTTTATACTCTCTTTTTGGCTTTATTTTGTACCTTTTTTCCCCAGGTTTAGATAGAAGGTATCTAGTACTAAAAATCCGATTTAATCTTTAGGCTTTACCTAATTTTCAAACAAGAGATTAGCATTTGAAGGGCAAATCATTGCTTTCTTTCCCCTCTTCAGGTAGATTAGAAAGGACCGGGGAGGCCAAGTATAGGCCAACTGAAAATAAACTAGTCTCTGGTGCCCAGGTGGTTGAGTCCTCCTCTTCCCCAGTCATTTTTCCTACCCAAAACCTCCGTTCTCTCCACCCTGCCTCCATGCTTCCAGGTGTTTAGTAGAGAATTATAGGACCCAAATCTCCCATCTTCAGTTTAAGGGAAACTGAAATGATAAAGATCTGAGTCAGTTCTCTTGGATTCTATCTTTGTCCTCTTGTAG
Seq C2 exon
CCCAGACTGCCTCACTCAGTCACATGTTCCCTCTGTGGAGAGGTGGATCAGAATGAAGAGACACAAGACTTTGAGAAGAAACTCATGGAATGCTGTATCTGCAATGAGATTGTTCATCCTGGCTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120:ENST00000398645:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0200815=zf-CXXC=WD(100=52.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATTACGAAGCCTCACAC
R:
GGCAGCCAGGATGAACAATCT
Band lengths:
356-882
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development