GgaINT0002967 @ galGal3
Intron Retention
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28088704-28091463:-
Coord C1 exon
chrUn_random:28091326-28091463
Coord A exon
chrUn_random:28088840-28091325
Coord C2 exon
chrUn_random:28088704-28088839
Length
2486 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
ATTCTCTCTCATTCCTCCAGCCA
3' ss Score
8.52
Exon sequences
Seq C1 exon
GATTATTATAAGATAATTAAAACACCGATGGACATGGGAACAATAAAGAAACGCTTGGAGAATAACTACTACTGGAATGCTCAAGAATGTATCCAGGACTTTAACACGATGTTTACAAACTGTTACATCTACAATAAG
Seq A exon
GTATGATGAGCTCCTCTGTGTTTTCAGAGGGGATCTGCTGTTCTTGCTGTTTGTAGCTCTGCAAAAAGCCAAATTGTGGCTGTGTGCTTTGGAGCTCACAAGTCTGACATGGGGAGAAAGTGGTGCTGCAGAGAGCAGCGCCTGGAGTGGTGTCCTGCCCGGCTCTGCTTCCATTGCACTGCAGAAGATTCCCCTCCAGACAGCAGAAAGATCCTGGAAACCACTCTGTAAACAGTTATGGAACCATCTGGGGTGCAGGGAGGGGATGTGGAATGTCAGGGAGTGCTGCATTCACCGCTGATGGATTGGGGAAAGGAGCTGAGCGTTGGTGCAGCGTTTGGGTGCTCTGCAAAGATGGGAAGGCACCAAATGGGCAGAGAATGCACCAGGCAGATGCTGCTCGGAGCTGGAGGTGCTGCAGAGACATCGCCTCGTCTGCCAAGGAACCAGAGAGCAACAGACACCAACCAGAGAGCAGCCAGGACAGCATTCCTGCAGCCCTGCCCCAGTTTAGTCCCCTCTCAGCTCCTGCCCTCCCTGTTCCTGCCAGCTCTTCTCCCTGGTGCTTCACCCTCACTCCATTTGACCATGGTCGCCTCCTCTTCCTCACTCAGAAGCATTGCACAAGACCCAGTTTGTTCCAGATGTGTTGTTCCAGGTAGATTGCCACTAGCTGAAGTGCAGGCAGGCAGCTCTGTGGTTCCCTTTCTCCACTCCTCACTCCACAAAGTTTCTTCTTCCTCAAAACTCCTCCTTGATATCCACAGTGACCACTGCAGTTGCTTTCCAAGGTTTGCACTCCCTCTTTAACCCACAACTTCATACCCCAGCAGGCACTGCTTGTTACTGCAGATAATTTGAGTTTTGTTTGGGTTTTACATTCTTGTCTTGTCTTGTTTGGGTCCTTCAAAGCAATGCCCATGGCCTTTGCCTTCTCTGCTTTGAGCCAACACAGTGCAACTGGAATGAGGCTCTGAAGGCTTCAGACCATCCACACATACCTCCGTGTCTGCATTATTTGCTGCCACACGTCCACATTTCCCCCAGTTTCCCACTGCAATGCCTTCCTGTTGCTTTCTCCCTCGCCCCTCCCTTCTCCATTCTCTGCATGTACTCAAGAAATGGGTTTCGGACCGCACGGAGCCTGCAGACTGTCATCATTTCTCATCTTCCATCAGTCCTGGCTCTCGTTGGGTTGGTGGATGCCCTCCCTTGCTGCGAAGCAAAGCAGAAAGCCTGCAGAGCAGCTCCCAGGCCTTGTTGGTGCCTTTTGTAATGGATTCCTGGCCAGTTCTTCCCATTCTCATCGTTTCCTGACGTGTTTCAAAGCAAACACCCAGCCCTGTGCCATGCAGTCATGCCAATTAATTCAGAGCTCATCAGTGAAACGTTGATGTCCATCGTTTGTTCCCACCTGTGCTGCTGCAGAGCACTTCCAAAGGATGCATCCTCTCACCAACGTCCTTCACACCTTCCCTGACCTCTGCAAATGGAGCTTCCTCCTCCCAGCCTGCCTTGTCCAGCACCAAGTGAAGGTGTTGGCCTCCCCTATCCCCACAAGCCATCTGCCTCCTTCACTTCCTCTCCTTCTCCAGTGCGTGGGAAGCATTTCCTTGCAAGCTCATGCTGTCATCTTCCATCTTCCTCCCACTTGGATGCTTTGATGAGGGATGCAGAGTCAGGGGAAAAGGACAGCCTGCAGGGATCCTGAGTCTTGTTCTTATAGAATGACAGCATGGCTTGGGTTGTAAGGAGCCATAGAGATTACGGAACCATGGAATGATGGAATATGTTGGTTTGGAGGGGACCCTGAAGATCATGGAATGACACAATGGGCTGCGTTGGGAGAGTCCACAAAGGTAGCAGAACCATAGGATGATGGAACGGCCTCGGGCACCTCCAGGGATGGGGCACCCACAGCTCTGGGCAGCAGTGCCAGCGCCTCACCACCCTCACCATGAAGAGTTTCCACCTCATTTCCCACTCTTCCCTTCTTTCTCCTCCTCTCTCCATCCAGAAAGCAGCAGCAGTGCCTGCAGTGATCAGCGTGGGTCACTTTATTCTGCCGTCACCCGTTATGTGCCATGCACAGGTCCATGCCCATCATCTCTCCGTGCCTTTGTAAGCACTTCAGGACAAGGACTCTTTCACATATTGAGTGCTCAGGACAGCTGTGTGGCAATGGAAACAGTGCAAAGAAGGATCACAGTGTGCAAAAGCTACAGGAGTTGCAGAGCTGGGAGGTGATAAGGATTACAGTTTCCAGCCAGAGTTCCACATCCCACCTGTGCCTCACAAAAAACTGTTCCAAATTGTTCCTGTTTCATTTTTAATTGTTCCTGTTTCATTTTTGATTGATTAAACTCGGTGTTAAATGGAGGAAAAGCTCAGGCAAAATCTTCGTGCTGATCTTGGTTTGTTTAGAGTATAGCAGTCCTTTTTGTAGAGAAGTGCCTTGCCTGATTTATTCTCTCTCATTCCTCCAG
Seq C2 exon
CCAGGAGATGACATAGTCTTAATGGCAGAAGCTCTAGAAAAGCTCTTCCTGCAGAAAATCTCTGAAATGACGCAGGAGGAAACAGAAATCGTTATAGCCCAGACAAAAGGGAGAGGACGCGCACGGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295:ENSGALT00000035893:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(52.3=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(11.6=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]