GgaINT0003165 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:28137228-28137532:+
Coord C1 exon
chrUn_random:28137228-28137321
Coord A exon
chrUn_random:28137322-28137456
Coord C2 exon
chrUn_random:28137457-28137532
Length
135 bp
Sequences
Splice sites
5' ss Seq
TGCGTACGT
5' ss Score
6.22
3' ss Seq
CATCCCTTTTTGTTCAACAGGGC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GTCTCGACCATCAAGAAAGGGCACCTGAAAACAAGAAGCGCTACAGTGAGATATTCCGCAGCCTGGATGCCATAGAAATCTCAATTGGAAATGC
Seq A exon
GTACGTAGAGAAAGAGGGGCAGAACCCACTTTTTGGGTCACTGAAGCCTTCATCTGCGGTAGGGATGGATGGTCTCAGTGGTCTTTCCCAACCTTGATGAGTCTATGATTTATTTCATCCCTTTTTGTTCAACAG
Seq C2 exon
GGCAGTGGATATGTTCATTGGGGACGCCGATGGCACTGGAGATGCAGAGCTGTCCACGGAAAGGGAGATCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022319:ENSGALT00000035892:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGACCATCAAGAAAGGGC
R:
CACAATGATCTCCCTTTCCGTGG
Band lengths:
170-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]