RnoINT0065859 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21360961-21361891:-
Coord C1 exon
chr16:21361807-21361891
Coord A exon
chr16:21361049-21361806
Coord C2 exon
chr16:21360961-21361048
Length
758 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
TTATCTTTCCCAACCCCCAGGAC
3' ss Score
10.46
Exon sequences
Seq C1 exon
AGCTAACCCCAGCTCCTGAGGGCAGGAAGAGATACAGTGACATCTTCCAGAGCCTGGACAACCTCGAGATATCATTGGGGAACGT
Seq A exon
GTGAGTCTGAGCCTTGTGTTACCACGTTGGGCTGAGCTCCCTAATTATTTGGGTATCATGCTGCCCCACATCCAGACACCCTGACTTCCAACCTCCTGAGCATAAGATAGGAGCCCCCCAAACACCTGGGCCCTCTGGCATTCTAGATACACAGGTATTTGGGGTCTGTTTCAAAAGTGATCCTGAGACACACATGCAACCTCATGATCCCTTAAAAAGTGGTTGAAATAGCTATTAGCAGGAATTCTGTGAACCCCTAAATTGCCTATGGCCCTTCCAACCCTTTCTCAAGTCTTGTTTTTAGAAAAGGATCACACCTAGGAATGGGTATGCAGCAGGTACATAGCATTCGAAAGGCCCAGCATTTAGTCCTGCCTGTACCACAGAAGGGAGGGGGTGAGGTTTGGTTGATAGGATGCTCATCTGGCATACACAAAGCCCTGGATTCCATCCATAGACTGCATAACCCAGCCTGGGTGGTGCTGCGTGAGCGTAACTCCAGCACTTAGCAAGTAGAGGCAGAGAAGCAGGCCAACACTGAGTTGAAGGCCAGCCTGCCAGGAGACAGAGCTTCTGCTTCAAAGCAAACTACAGCCTCCCTGCCTCCCCTAAATCCTCAGGTCACACCTTCCAAATCATAGACAATATCAATCTCTTCCTTCTCCCTCAACTGTCCTAGGATCCCAGGACTTTTCCCCAACAAAGGACAGTCTGGACAGAAGTGGCTTCCTGACACCATTATCTTTCCCAACCCCCAG
Seq C2 exon
GACTTTCGATCCCCTGGCTGGAGACCTTGTACTCAGAGAAGACCTGGAGCCTGACAAGACTGACACAGCTGCAGTGGAGACTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]