GgaINT0003273 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:29795697-29795948:-
Coord C1 exon
chrUn_random:29795834-29795948
Coord A exon
chrUn_random:29795767-29795833
Coord C2 exon
chrUn_random:29795697-29795766
Length
67 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GATGCTTCCCCTGCCCGCAGGTG
3' ss Score
12.5
Exon sequences
Seq C1 exon
AACGACGTGGGCGGGCAGCGCAGCCTGGTGAACAAGTGGACGACGTTCCTCAAGGCGCGCCTGGTGTGCGCCGTGCCCGGCACCGACGGCGCCGACACGCACTTTGATGAGCTCC
Seq A exon
GTGAGTGCCCGCCAGGATGGCCGGGTGGTGCCCAGAGGGGCTGTACTGATGCTTCCCCTGCCCGCAG
Seq C2 exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722:ENSGALT00000035861:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.0=100)
A:
PF0140314=Sema=FE(32.2=100)
C2:
PF0140314=Sema=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCCTGGTGAACAAGT
R:
CTGGAGGTGGAGAAGGCAGC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]