GgaINT0003276 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:29795035-29795419:-
Coord C1 exon
chrUn_random:29795196-29795419
Coord A exon
chrUn_random:29795138-29795195
Coord C2 exon
chrUn_random:29795035-29795137
Length
58 bp
Sequences
Splice sites
5' ss Seq
CACGTGGCA
5' ss Score
-7.29
3' ss Seq
CCCGGCCTCCCCCTCACCAGCCT
3' ss Score
5.92
Exon sequences
Seq C1 exon
TGCCCCAGCAGAACCTTCGGCACCTTCAGCTCCACCAAGGACTTCCCGGATGAGGTGATCCAGTTTGCCCGGCACCACCCACTGATGTACAACCCAGTGCTGCCCCACGGCCAGCGGCCCCTCTTCCTGCAAGCCGGCGTGCCCCACACCTTCACCCGCATCGCCGTCGACCGCGTGGCTGCCGCCGATGGCCACTACGACGTCCTCTTCATTGGCACAGGCAC
Seq A exon
GTGGCACCCTCGCTCGGGGGCTGAGGGCTGGGGCTGCCCCCGGCCTCCCCCTCACCAG
Seq C2 exon
CCTCCCTGCAGATGTGGGCACCGTGCTGAAGGTGGTCTCGGCACCGCAGCAGAGCTGGCACGGCATGGAGCCGCTGCTGCTGGAGGAGCTGCAGGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722:ENSGALT00000035861:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(21.5=100)
A:
NA
C2:
PF0140314=Sema=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTACGACGTCCTCTTCA
R:
GAAGACCTGCAGCTCCTCCAG
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]