GgaINT0003277 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:29794919-29795137:-
Coord C1 exon
chrUn_random:29795035-29795137
Coord A exon
chrUn_random:29794964-29795034
Coord C2 exon
chrUn_random:29794919-29794963
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCAACCTTGCTCTCCTGCAGGAC
3' ss Score
10.55
Exon sequences
Seq C1 exon
CCTCCCTGCAGATGTGGGCACCGTGCTGAAGGTGGTCTCGGCACCGCAGCAGAGCTGGCACGGCATGGAGCCGCTGCTGCTGGAGGAGCTGCAGGTCTTCCAG
Seq A exon
GTGAGTCCCTGCGCTGGGGGCTGCGCACCTCCCGTGCCCTGCCTGTAACTGCCAACCTTGCTCTCCTGCAG
Seq C2 exon
GACGCGTCCCCCATCGCCAGCCTGCAGCTCTCCTCCAAGCGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722:ENSGALT00000035861:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.9=100)
A:
NA
C2:
PF0140314=Sema=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCAGATGTGGGCA
R:
TACCCGCTTGGAGGAGAGC
Band lengths:
147-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]