GgaINT0005591 @ galGal4
Intron Retention
Gene
ENSGALG00000005824 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr15:7838030-7838959:-
Coord C1 exon
chr15:7838874-7838959
Coord A exon
chr15:7838299-7838873
Coord C2 exon
chr15:7838030-7838298
Length
575 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTCCTACATTTCTCAACCAGCCC
3' ss Score
5.92
Exon sequences
Seq C1 exon
ACAGATTACGGCTGTGACATTGAAAAGGGAAGTGTGTGTACTTACCACCCTGGCGCTGTGCACTGTGTAAGGGCCATTCAAGCCAG
Seq A exon
GTAAAGAACAATTTTTGTAGCCACATTTTTTTTTAATGACTTGTTTCACCTCAGAGATCATAGTATCACAGAAGTCAGAAAGGCCTCTGGAGTCTCAGCAATCAGGTTTAAGGCAATCACTGTTTCTCTCTTGCTCCCCTATTACTCCTCATTGCTGAGGTGAAGTTAATGCCTTAGTCTTACTGGACAATTACTTGCACAGTGATGAACCTCAAGATACATAAACAAGCAGTAATATCTAAAAGCAGTTTGATTAGACTTAATTAAGCCTTTTTTGTGATGGTTGTTGGTTGCACTTGTTCTCTCAGAATAATGCTAGTAGTGCTATGCATGTGTGGTCATAAGGCCCGCAGAGCTTCCCCACAGCCTTGGTTAAAGACCAATCCCACCCAATCCCTGATCTGATCTATTCCATAAGAGCAGAAACAAAAATATTTACTGACACACCTTTTGTGGATATCATAGAGCTTGGTAACCAAAACATCTGTTCATGTCCACGTAAAGGCAGCCATTAAACACAAACGGACCTCCCAGAGCTGAATGATGACATTCCTCTTCCTACATTTCTCAACCAG
Seq C2 exon
CCCCCAGTACGGAGCAGGACAGCAGTGCTGCTACGACTCCACAGGGACCCAAATCCTCACACAAGACTCCACAGGAGGCAGCACACCTGATCGAGGCCACGACTGGGGGGCACCACCCTTCCTGAAGCCTCCCCGGATACCTGCCTTTTCCCATTGGCTTTATGATGTTATCAGCTTCTATTACTGTTGCCTGTGGTCTGATAATTGTCACTTCTATATGAAAAATCGCCCCTCTAGTGACTGCAGGACGTATCGCCCACCCCGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824:ENSGALT00000009356:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.198
Domain overlap (PFAM):
C1:
PF0378212=AMOP=FE(19.2=100)
A:
NA
C2:
PF0378212=AMOP=PD(52.1=83.5),PF065357=RGM_N=PU(31.8=30.8),PF0009420=VWD=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTACGGCTGTGACATTGA
R:
GCGATACGTCCTGCAGTCAC
Band lengths:
342-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]