GgaINT0005595 @ galGal3
Intron Retention
Gene
ENSGALG00000005824 | SUSD2
Description
NA
Coordinates
chr15:8076043-8077022:-
Coord C1 exon
chr15:8076774-8077022
Coord A exon
chr15:8076316-8076773
Coord C2 exon
chr15:8076043-8076315
Length
458 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CTTTCACTTTGTCTCCCAAGGGG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTCTCTTTCTTCATTCTACGGATGATCAGAAAGTTACAGTGATGTTCTCCTCTGGGTCTGGAATGGAGATTAGGGGAAGTGGAGGATTTCTGACCCTGACAGTTCTGCTCCCAGAGAAGTTTATGAATCACACTCAGGGTCTCTTCGGAGTGATGAATGGTAACACAGAGGATGAGTTTACCTTCAAGAATAAGACAACCATGTCAGTTCATGCGAGTCCCCAACAGTTGTTTGAGTTTGGAGCCAGTT
Seq A exon
GTAAGTGATTCCTCTGGTTGTCTGTTATTACATTTTCTTTGCAAATTCAAGCCTGTTTGTGACCTACAGACCAGAAAATTGTCTGTGCTAAGCAGCCTATTCAGAGTGAGAGAAAGATGCTTTTCCACTTGGTTAAATGGGTAATACGTCTAGCCAAAATGGATAAAGAGAGAATCATGATAAACCCTGCCTGTTTTTAATCAAATTTTACCAGCATCTGTGAAATCATAGCTGCACATTTATCAATAACTAATTGATCGACCATTAAACTTAGTGCAAGGTTAAAATGCTGCATGCAAAAAGGAAAACAATCTTGAACTGGAAGGAGGATGTATAAGATGGGACAACATAGATATCTTACAGCTCTGGCTATGTTTACCTAAATAAGTACTTGGCAGAAGGTTGTGTATGTCTGTAGGCAATGTTACAAATGAATCTCTTTCACTTTGTCTCCCAAG
Seq C2 exon
GGGCTGTTGAAAATGGAACTTCTCTCTTTACTTATGACACAGAGACCTTATTGAATGATTATTTTTATGGGGAAAAGCACAATGCCTCCTTTCTGCCAGTGTTCCATCCTCAAGAAGACCCTGCTGATCCCTTGGTGGAAGAGATGGTCTCACTCTGTGACTCAGACCCATTCTGCAGATTTGATGTCCTGACAACAAGAAGTCTTCAAGCGGGAAATTTCACAAGACTCTCTCATCAGAACCACAAGCAGTTGGTAGAAAGCCTAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824:ENSGALT00000009356:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(39.2=77.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGGTCTGGAATGGAGA
R:
TCTTCCACCAAGGGATCAGCA
Band lengths:
343-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]