HsaINT0162031 @ hg19
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:30667]
Coordinates
chr22:24583170-24583811:+
Coord C1 exon
chr22:24583170-24583418
Coord A exon
chr22:24583419-24583538
Coord C2 exon
chr22:24583539-24583811
Length
120 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCCGGTCATGTATCTTCCAGGGA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GAATGTTCCTGTCGGTGGCTGCCGGGGACAGGGTCTCCATCATGCTGGCATCAGGGGCCGGCCTGGAGGTCAGCGTGCAGGGCCCGTTCCTGAGTGTGTCCGTCCTGCTGCCTGAGAAGTTCCTCACCCACACCCACGGCCTCCTCGGGACACTCAACAACGACCCCACCGACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGGCACCAGTCCCCAGGAGCTGTTCCTGTTTGGGGCCAACT
Seq A exon
GTGAGTGACCGTGGAGTATATGGGGCAGACGGGGTGGGGGTTACTGGAAACATGGCACGGGCAGGGCTTGGGGACCAAAGGGAGCCATGCCCAGCCAGGCCCCGGTCATGTATCTTCCAG
Seq C2 exon
GGACCGTGCACAATGCGTCCTCCCTGCTCACCTACGATTCCTGGTTCCTGGTCCACAACTTCCTGTACCAACCCAAGCACGACCCCACCTTCGAGCCCCTCTTCCCCAGTGAGACCACCCTCAACCCCAGCCTGGCACAAGAGGCAGCCAAACTATGTGGGGACGATCATTTCTGCAACTTTGATGTGGCAGCCACTGGGAGCCTGAGCACGGGCACTGCCACTCGGGTGGCCCACCAGCTGCACCAGCGTCGCATGCAGAGCCTGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994-SUSD2:NM_019601:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(38.9=77.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCATGCTGGCATCAGG
R:
GGAATCGTAGGTGAGCAGGGA
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)