GgaINT0005849 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C6U3]
Coordinates
chr15:9753680-9754570:-
Coord C1 exon
chr15:9754440-9754570
Coord A exon
chr15:9753715-9754439
Coord C2 exon
chr15:9753680-9753714
Length
725 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCCCAAAGGCTTCACTGCAGAAC
3' ss Score
2.41
Exon sequences
Seq C1 exon
ATGGCCAGCGTGCAGCAGGGCGAGAAGCAGCTCTTCGAGAAGTTCTGGCGAGGGACCTTCAAAGCCGTGGCCACACCGCGACCGGAGAGCATCATCGTGGCCAGCATCACCGCCCGCAAACCGCTGCCCAG
Seq A exon
GTAAGGGCGTGGGGAACCCTCGGCTTGGGGGCAGCTCCCTTCTGCAAATGTCTTACTTAGGGGCCGGGGTCACAGGAGACCCCCCCGCCTTGGGCTGGGGGGATCTGAGCTTTCCGTTCTCCCCTCCCCAAGTGATGCTTGGGAAACTTTGGCTCTTTGGAGCCTGGAGTAGTGTTAGGGGCTGGATTATAGTTATGGGGTGGGGGCTCAACCATGCAGCCCCCAGCACATGTCCCTCTGATTGTCTGTCCCCCTCCTTCCCTTGGAGCCGAAGCCCAGGGCAGCAGGGTCCGACAACACAAAATGGGACCAAGGGGCTGCTGGTACCCACTGAGCTCTGCTGGGATGCGCAGGGATTTGTGAGACTTCGTCACAACAACACATCCTCAAATTTAGAGCGTCTTTATTCTGGTGGCTGTCACAATATTGGTTAAGAGCATCCTTGCACTGTTTTTCAAAGGGAGTGAAGCTCCTTTCCATTGCTCAGTGTCACCAGAGTTTGGCAGAGATGTTGGATCGGTGCAGGAGAGGGCTGGGGGATCAGCCTGCACCAAACATCCAAGAGTCCATGGGGACCCCCACTGAGGTCACTGAGCGCTTCCACCTCTCCATTAGTGATCAGTCAGGTTTGGAAATCGGGGAATCTCAGCTTGGGGCACCATGGACAGCAGTGGCTCTTACAGCATTTCCACGCCTGGGCTGCGATCCCAAAGGCTTCACTGCAG
Seq C2 exon
AACTGATCTAAAAGCAGAGCCCTCTGTGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388:ENSGALT00000011947:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]