GgaINT0005856 @ galGal3
Intron Retention
Gene
ENSGALG00000007388 | SRRM4
Description
NA
Coordinates
chr15:10006593-10007757:-
Coord C1 exon
chr15:10007665-10007757
Coord A exon
chr15:10006744-10007664
Coord C2 exon
chr15:10006593-10006743
Length
921 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTTCTGCATGTTTTCTGGAGGCA
3' ss Score
-2.63
Exon sequences
Seq C1 exon
CTCCCGTGGGCGCACCCGGAAAGCTCACCGCCACCGCCGCTGCCACTCTCGCTCAGAGAGCTCTGACTCCTATTCCCCGAGCTGCCGGAGCAG
Seq A exon
GTAATGTCACCGCTTGTTGGGCTGGCTGCCCTGCAGCACTGCAGTGGATCGGGGGTGTGATTGCAATGGCTCATGTGCCCCACTGACCCTCTGGGCAGAGCCATGTCCCACTCTGGCAGTTGAGTGTTGAGCTTCTTGTGGTCACAGCCATAAAACAGAGGGTTTGGGCTCAAGAAGCGGTGACTGCATCTTCTCAGCCCAGCAGTCATTTCTAATCCCCACGGCTGATGATCAGCCAGTGACAGCTGATTTCAGCCCAGTCTGCCTCCCCCAGCCCAGGGCTCTGTACTGCCAGTGTCCCAGGAAAGCTTCAAGCTTGTTCTTAGCAATGGAAATGTATTTGCCAATGGCATCCCATGGCCACTGTCTTTGACCTGATTAAAATCTCTTTCCTATAGATGACAGATGCATCCTGAGGCCAGCTGAGTGGATGCTGGTGCTAGACCTGCATCTCTGCAATAGCAAATTGCATAGCTATGCACATTGTGAGCTTGTGATGTGTTGTTTGAAAGAGCTTTATGAACAAACCACTCCCTCTGTCCCACTCCACTCCTTCTAACTACTGAGAATCTTCTCATGGAAGCCTGGTGATCAGTGCAGGGAGGAACACAACCAGCAATAGGTGGGAAGTTCATGCAAGTGCAGAGTGTCTTCTCTTAGAGGTGTATTGCCATAGGGACATTCAAGGCTGCATGGAAGCTGTGAGCCACCATAAAATTGGGAACTGGAGCAGAAACTTGAGGTTTAAGACCCAAACCCCACATTTTGACTGCAAACCAGAATGTTTTTAAAGCAGGGAAGCAAAAGATTCCCTTTCTCTCCACCCTGGCTCCGCAGAGAAGACAGGGGTTTGCGTGCGGCTCCCGGTGGGCACTGCTGCACTACTGAGGATAACGCTTTGCTTCTGCATGTTTTCTGGAG
Seq C2 exon
GCACAGAGCCAGGTCTCGGGAGGAAGGGCGTAAAGCACGGCGGAGACGCTCCCAGCGCCATGCAAAAGTCCCAGCAAAGAGAAGCTCCTCTGCAGAGGTTCAGGCCAGCCAAACCCTCCCACTGCACAGCTTCCTGTCTCCTAAGGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007388:ENSGALT00000011947:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCCGGAAAGCTCAC
R:
TCCTTAGGAGACAGGAAGCTGT
Band lengths:
230-1151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]