GgaINT0006049 @ galGal3
Intron Retention
Gene
ENSGALG00000004225 | KDM2B
Description
NA
Coordinates
chr15:5528913-5530211:-
Coord C1 exon
chr15:5529942-5530211
Coord A exon
chr15:5528950-5529941
Coord C2 exon
chr15:5528913-5528949
Length
992 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGG
5' ss Score
8.17
3' ss Seq
CTTTTTCTTTCTTCCAACAGCTA
3' ss Score
11.27
Exon sequences
Seq C1 exon
GCGTACAAGCAAAAGCGCGGACCAGGATTCAAATACGCATCAAATCTCCCAGGCTCATTGCTGAAGGAACAGAAAATGAACAGAGACAATAAGGAAGTAACAGATGCTGCAAAACGGAAAGGGGACTGTGAAGAAACTCCCAGGCGGAAATCTGAGGAACATTCCAAAAAGCCTCAAGTTGACTCAATTCTGAGGAGAAAGTCAGACGAAGTACATCTGCGGAGGAAAAGGAAATTTGAGAAACCCCAGGAACCCTCTATGAGAAAACGG
Seq A exon
GTATGGCAAAACCCTTATGTACGTACGCAGATGCGCGTGGGCTGGTTGGGGCTGATGTCTCTTGCCTTCTGGCTTGTACCTCGTCCTGAAATCCCAGATTGCTACAAAAGAAACTGCGATGTTTTACCTTCCTTCCTGAAAACTGCTTGTCTAACAGGACAGTAGTTTGAACGGTGAAGCTCGGGTTGACATTCAGAGGCTGACAACACTGGGCTGTGGCTGTTGGTTTGTTCAAAATACTGGAAAACCCACTTTAACTAAAAAGTCACTGCAAGATGCTTGGAGTAGGAACAAAGTGAAAATCACTTTTTTATGGAAACCCTTTCATCTGTTGCCACTTGGTGGCGCGTGGCAGCTTGTTTTGTGGCTGATTCACAGATGTACAGTGTGTAGAACTGATCAGAGGACCTTTAGGAATGACACCTCCTGTAGCCTGCAGAGAGGAGGAGCTGCTCACAGCAGCACTGTAGCAGCTTTTCCCTGAATTTAAAAGTCAGAGCTCTCGGACCAGGCAGAGACGCTCTGAATTGCCGTGTGGATTACAGAATATTCTACTTAAGATATAGAGAAATGCTGGCTTCCAGAGGTAGAATTGAGGACTTAGATCCAACTTCTCTTACAAGTAGACGTCGGATGGCTTTATAACTGGGATCTCTGGCAGTTCTTGTACTGCATGCACTGCAGTTCACTAGGACTTGGTAGTTGCTCTGCCTGTCAAGTCTTGACAGAGAACACCACAGTATGGGAAATGTAGGGATTGTCGTTGCTTTGGTGGAGAGCAAAATTCATGACAGCAGGTTATGCGTATCTGCTTCTTGGCCATGATCTCCTTTTCCCATCCCTGCGGACTCACTGGAGTGTTTCTGGATGGCTTGAATTGCTCCGTGAAAGCCCCCAGCGCGTCAGGAAGGCACTGTGAGTCACCAGAGCTTCAACAGACAGCAGAACAAATGTCATCTTCTGGGGCTTTTACTTTTTCTTTCTTCCAACAG
Seq C2 exon
CTAAAACTTGGAAAAGAAGAAACTCTTCAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225:ENSGALT00000006725:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]