GgaINT0006819 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7346899-7347471:+
Coord C1 exon
chr15:7346899-7347084
Coord A exon
chr15:7347085-7347305
Coord C2 exon
chr15:7347306-7347471
Length
221 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TGCCCTGCTCTGCCCGGCAGCGC
3' ss Score
8.98
Exon sequences
Seq C1 exon
TGTTTATGCTGAGCTGCAGCTTCCCACGAAGACCCGACTTTGGAGACGTCACCGTGATGGACCTGCACTCGGGTGGCATTGCTCACTTCCACTGCCATCTGGGCTACGAGCTGCAGGGCCCCCACATGCTCACCTGCATCAACGCGTCCCGGCCCCACTGGAGCAGCCCCGAGCCCATCTGCTCAG
Seq A exon
GTGTGGGCATGCAAATAGCATAGGCGAAGGGGGAAACCCCGAAGCAAAAATAATATGGGTGCTTTGCGCTGCTCGTTGAATGCAGTCCTGACAGCGATGCTGAGCTGTGCGACTCCAGCCGTTGTGTGGCAGCAGAATGTATTCCTTGCTGAGGAGGGTGGGGGGGGGAGGTGGGGGCTGTGCCCCTTTTTGCCCCTTACCTGCCCTGCTCTGCCCGGCAG
Seq C2 exon
CGCCCTGCGGAGGCACCGTGCACAACGCCACCATCGGCCGTGTCCTCTCGCCCAGCACCGCGGGCAACCAGTCGGGCAGCATGTACTGCGTGTGGGCCATCACGGCGCCCCCGGGCCAGAAGCTGCACCTGCACTTCGAGAAGCTGCTGCTGGCCGAGAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
NA
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAAGACCCGACTTTGGAG
R:
CAGCTTCTCGAAGTGCAGGTG
Band lengths:
308-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]