MmuINT0142291 @ mm9
Intron Retention
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112894966-112900802:-
Coord C1 exon
chr5:112900617-112900802
Coord A exon
chr5:112895132-112900616
Coord C2 exon
chr5:112894966-112895131
Length
5485 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
ATGTCGCTTTCTGCACCCAGCCC
3' ss Score
5.96
Exon sequences
Seq C1 exon
CCTTCATGCTGAGCTGCCCCTTTCCCCGGAGGCCCGATGCCGGAGAGGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGCCCACTTCCATTGCCACCTGGGCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAG
Seq A exon
GTACCATGAGTGCTTGCCAGCCGGGCAGGGCGAGGGTAGGCCAGCACCCTCTAAGGCACTGGTTAGACCTCACGCTGTGCTGACCCCAAACCGTAAAATCATTCCATTGCTAGTTTTAACTGTAATTAAACTGCTACTGTTACGAATCTGATATGTGGGATATGTGACCTACAACCCTTGTGAAAAGGTTGAGAACCAGTGCCCTAGGGCATAGGGTGTAACCTTGGGTAAGGCCTTTGCCCTCCAGGCTGTGCTGTCATACAGTGCCCAGGGTATGAAATTGGCTCCTGAGGACACATACCACACAGCAGTGTTCTGCCCAGTGAGAACCTTGCTCTCTAGCAGTCACTCAGCAGCTGACTTGGTGGTGGCTGTTGTATATCCTGGATGCTAAGCTTTCTTCTCTGTGATCTGCCAGTTGTGAGCTCTCACGCGGGTAGCAGACATGCAGCTTTTCCCACTCGCCACGGGGTTTCCAAGCTCTCCCTGCAGTGCAACATGTATAAGCTGTTCTTTTTCATGGCTGTGTAATATTTCGTTGTGAACATTATGCTCTGTTTTGTTTACCCATCCATCCAACATTGAACTTTGGAATTATTTCCACTTTTTACCTAAGTAACTGCCCTGCTCTGAACATAGAAATTAGTTTCCATTTCTCTTAAATATGATCTTCAGAACAGTGTTGCCAGGTCGTGTAGTGTAACCTCTACAAACCCACACTTCCCACAGAAACCACACCATGCCATTTCACCTGCCACTGGTGGCACACGGCAGTTCTCTTCCTTCCAACGCTCACCAATGCACTGCTTTCTACAATCAGCACAGTAGGCCTACAGACTCACCACGTTCTCATGTTTCCATGATAAGCACTGCTGTCACATCTTTCTCAATGCTTCTTGTAGCTGACAGTATGCCATCTCTGAAAAGGCTCTTTAATCCCTTTGGCCATTGCTCAAGAGGTTACTGGGTTGTTGCTGTACTATAAGTGCTCTTTACATATGATGGATCAAAACCTTCATGAGATATGATTTGTAGGCCTCTTCCCCGGTTCTGTGGGGGTTTGTTTGGTTTTGGTTTTGGTTTATTTTTTCACATGGCCTCTTCGTAATGATGAGGTCTCTCTCATCCCTTGTTTCTTTTGTTGCTTTGACTTTGGGCTTAGCTGCTGCTGTTCTGTTTTGTTGGTTGAGCTTAGTCAACATGACCTCAAAAAGTTGGTGACAGCCTCCAACTAAGGTGGCCTGGTGCCCTCTGGTGGAAAGAAGTAGACAGTACAGGCCAGCAAGAGGAAACCTGGACTTCAAGGACAGACAGGGGGGATCCTTGGCTAGTGGATCTGACATCCTTCGAGGATCCTGCCAGCATCCACAAACGTCCACTGTTACCAGGTTCTGCGCCTATGATACGAGCTGTGAGGGTCCTGCTCTCTCCGAGTCTCTGCCCTGGTACAGGATGGCGTCTTAGTTACTGCTTGTGGCTGTAAAGAAACATTGTAACTATGGAAACTCTTCTTTAAAAAACAAAGTAATAAAAAATAAATAAAAGCATTTCATTGGGGGTTTGCTTAGAGTTTCAGAGGGTGAGTCCATGAGTAAAAAGCACACAGGTGCTTTATATCATGGTCCACAGACAGGAAGGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGCGCCTGGCACAGGCTTTTGAAACTACAAATCCCATCCCAGGAACTAACTTCCTTCAACAAGGTCACACCTCCTAACCCTTCCCCCAACAGTTCCACTTCGTGCAGGGGGTGGGATGGGGGTGGGGCGAGGGGGCTACCATTCTTATTCAAACCCCCCAATATGTGACCAGATGAGAAAACATGGCGGGGGTGAGGAGGGCAGAGAGTGCCAGAGAGGGGTCATAGGGGTAGTGCCACAGAGCAGGTAGGGACAAGAGAAACCCTGACACTCAGGGACTCAGGGACAAGAGGTGATGGTAGGCCAGAGACCAGGGAAAGTGTCCCCAGGGAGCCAGGCTGTTGGAAACTGAGTGGGAGGTACCAAAGTGAAGGTCAAAGGTGTCGGTTTTCCCTGCCAGTGAGCTATCCTGTGAAAAGGCTGGTGGGTGAAAGGGCTCAATAGGTTTGAGGAGGTCAGCATATGCTATGGTTTGTATATGCTTGGCCCAGGCAGTGACAGTATTAGAGGGTGTGGCCTTGTTGGAGTGGGTGTGGTCTTGTTGAAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTAGGTGTGGCCCTGTTGGACTGGGTGTAGCCTTGTTGGAGTAGGTGTGGCCCTGTTGGAGTGGGTGTAGTCTTGTTGGAGTACGTGTGGCCCTGTTGGAGGAGGCATGGCCTTGTGGAAATGGATGTGATCTTGTTGGAGGAGGTGTGGTCTTGTTGGAGTAGGTGTGGACGTGGGCTTTAAGACTCTCATCCTAGCCGCCTAGAAGCCAGTCTTCCACTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCATGCACTGTGCCTGCCTGGACTCTTCCATGTTCCCACCTTGATGATAATGAACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTTCCCCTCTAAGAGTTGCCTTGGTCATGGTGTCTCTTCACAGCAGTAAAATCCTAACTAAGACAGCATATGTCAGCATCACTTGGGAGGCAGAGGCAGATGAACATCTATAAGTTCAAGGCTAGCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGTTACATAGTGAGACCTTGTCTCAAAAACAAACAAGCCAAAGAAGAACCCCCCCCCCCAAAAAAAAAGACTATACTAACATCAGAAGATGGCAGGGCAGGATGGGAAGCAGCAGCTGTTCCTCAAGAGGGACCTGCCAGGGATGAGACCATAACCCCCACACCTCCACCCTGTCACCACTGGCACACCTCAGGTTCCGGAGGAATCCACTGTCTTGTGTGAAGTCCTTCACAGGTACATGCCACAGTGGATGTTTGAGCACTCAGTCAGGAAGGACACTTTCCATCCACCCTGTCACACAGCCCAGTCCAGGGCTGAGGAGAGCTGTCACGGCTTGTCTCCTTCTGTCAACCCAACCCCTGCATGCTGTCATTCAGCATTCTGTGAACATCTACCATGTATCAAGAACTGAACTGGGCACGCTAGGTGAGCCAAAGAGGCCTTTCTTCATCTGTAAAGTGTCCACCTGCCCTCCACCCCCAACCCCGGCTCCTTTCTGAATCATCAGATGTCACTGTAAATTCGAATGGCATGGAGCACCCCAGGCCTGCAGCCCAGGGACTCTACTCATTGGCTGTGCATCCTTGAACAAGCGACTTAATGTCTCTTAGCTGTTTTTGGTTTTGTTTTGTTTTGTTTTGTTTTTTGACTCCTTTGTAAAGTCAATAGTTGTTATTTGCCCAGCAAATGGTGTATAAAGCCAAGCATGGTGACCAAGAATGGTGACCATACGCCTGAAACCCCGGCACTTGGGAATTTAAAACAGAAGACTCACAGCTCAAGGCCAGTCTGGGCTACAAAGGGAGAGTCCTTTCTCACGGTTTTTGAAGAATTAAATAAATAGAAATTACTATTTACTGAGCACATACTACAAATCATGTCATCCAGTGCTGGGGGCCACTAGGACACTACTGTCATCACAGCCAAGAGCCCAAGCTGTTGCGAGATGGGTTTTGCAGAGAAACTCTTAGAAGGCAGAGGGCTGTGTTCTCCGCTGGTGAGAAGATATGTGAAGAACTCAGAATGCTCACCTAGCGTGCACAAAGCCCCGGGGTCCCATCCCCAGCCCCTGTGGAATCTCAGGAGCTGGAGGCAGGAAGATCAGGAGTTCAAGGTCATCTTCACCTACACAGTGAACTTGAGACCATCCTGGACTACATGAGACCCCCCCCCCAATGTCTTTAAAAGGAAAAGGGGGAAGGACTTGAGAAGAGAAGGTTCTCAGGACATGGGGGAGGAACCTGGAAGAGTCTTTGTGCTCTGAAGAAGAGACAAGTTCTATAGCATAACCGGTCTGATCTGGCTGCTTATGCATTTCTGCTCCTCTGACCCTTGGGGGGAAAGCCAGAGACTTGTGCACTGACAAGAAAGATCTCTGCGTATCCTCAATCCTCTTCAAGGACCTTGGGATCAATTCTCCAAGACACTACATTAAAACAGACCCACCTCTCGACCCCCTGAGACCAGGTCCCGGCATCTCCTCTCTGCTGTGATCTGACAGCCGTGCAGCTCCGTGAGCCACAAATCATGTGTAGTGTCACCTCGCCATATTATCTTAACGTAAAAGTGTTATATGGCTCCGGTTAAAAGAAAATTCCAGAAACACAAATGTACAGAGGATGAGAACAAATCACCTTTATAGCCAACAGTCTCAATCCATGCCTTCCGATTGCTCACAGGAATGGGCCAGGCAGGGCGTTGGCTCACAGGCTTCTTATGCTCTGGGATTTGTTAACAGTGTCTGAGAACTCAGTATTGGATGGTTCCCTGAAAACCCAATGTGTGCAGGGAGATACACCCTGACTCTGGTTTTGACCCTGAGGATGAAGGCGGAGCTGCGCAGCCTCACCCGCAAGCCAGTACAGATCTCCAAAGCTTCCCCGTAAGACATGCTCTCAGGGCTCGTTTCTGGGTCAGGGTGTTCCGACGTGGTTTTAAAAGCATTTTTGTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAATTGCACCTTGGGAAATGGTCACGGTCCTCCTGGTGAGTTCCTCGTGAATTAGTAAGGTTGTGCCTACAGCCAACGCTGCTGTTTTATTGATCCATTTCAGCTGGCCCTTGGTTGGGTAAATTAGAATGCAACTGGAGATTCTTCCATTCTCACACTCCACATGCAGTCCTAAATGCATGCTTCTCCTGTGAACTGCTTCCGTCCGCCCTTGGGAATCATTTCATAACTGAAAGTCTAGGCATCGGGCCAGGGAGATGGTTCAGCAACTTAACACACTGACTGCCAAGTCCCCAAGACCCTCAGGGTGGAAGGAAAGAGTTGATTCCTGGGGGTTGTCCTCTGACCTCCACACAGGCATTGTGACATGGGCACACATGCACACACACGAATGAATAAACTGTGATTTTTTTTTTAAATGAATGTCTAGGCACAATCAGCACCACAGGACAGTTTTGAATTAAGATCCTCCCTGCAGCAGCAGAATGGTGTTGGTGGATCCAAGCATGGAGGGGGTTAATAGGACAGCAGACCCCTCTGTGTGTTCCCAGCCTCACCCTAGCTAGAGAGCTCAGGTGCAGTCAGGGGAGACCAATCCCACCACTCCTCTCTGCTGGTCCCTCACCACCTGGCATGTCGCTTTCTGCACCCAG
Seq C2 exon
CCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTGCTGCTGCATGAGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-Sez6l:NM_019982:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
NA
C2:
PF0043115=CUB=PU(49.1=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: