GgaINT0007245 @ galGal4
Intron Retention
Description
Ig lambda chain V-1 region [Source:UniProtKB/Swiss-Prot;Acc:P04210]
Coordinates
chr15:7932828-7933299:-
Coord C1 exon
chr15:7933251-7933299
Coord A exon
chr15:7933126-7933250
Coord C2 exon
chr15:7932828-7933125
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TCTCTCCTCTCCCTCTCCAGGTT
3' ss Score
13.61
Exon sequences
Seq C1 exon
GCCATGGCCTGGGCTCCTCTCCTCCTGGCGGTGCTCGCCCACACCTCAG
Seq A exon
GTACTCGTTGCGCCCGGTCGGGGACTGTGGGCACGGGGCTCTGTCCCATTGCTGCGCGGGCAGGGCTGTGCGTGCGGGGCCGTCACTGATTGCCGTTTTCTCCCCTCTCTCCTCTCCCTCTCCAG
Seq C2 exon
GTTCCCTGGTGCAGGCAGCGCTGACTCAGCCGTCCTCGGTGTCAGCGAACCCGGGAGAAACCGTCAAGATCACCTGCTCCGGGGATAGGAGCTACTATGGCTGGTACCAGCAGAAGGCACCTGGCAGTGCCCCTGTCACTCTGATCTATGACAACACCAACAGACCCTCGAACATCCCTTCACGATTCTCCGGTTCCAAATCCGGCTCCACAGCCACATTAACCATCACTGGGGTCCAAGCCGACGACGAGGCTGTCTATTACTGTGGGAGTGCAGACAGCAGCAGTACTGCTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021139:ENSGALT00000009519:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0768612=V-set=PU(90.5=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCCTCTCCTCCTG
R:
CTGTGGAGCCGGATTTGGAAC
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]