HsaINT1016297 @ hg38
Intron Retention
Gene
ENSG00000211673 | IGLV3-1
Description
immunoglobulin lambda variable 3-1 [Source:HGNC Symbol;Acc:HGNC:5896]
Coordinates
chr22:22880706-22881396:+
Coord C1 exon
chr22:22880706-22880803
Coord A exon
chr22:22880804-22881096
Coord C2 exon
chr22:22881097-22881396
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
TCCCGTTTTCTCTCCTGTAGGAT
3' ss Score
13.06
Exon sequences
Seq C1 exon
AAGAACCTGCCCAGCCTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAG
Seq A exon
GTGCTGCCCCTAGGGTCCTAGCCACTGGTCCAGTCCCAGGGCTCTGGGTCCAGCCTGGCCCTGACTCTGAGCTCAGCAGGGCCCCCGCCTGTGGTGGGCAGGATGCTCATGACCCTGCTGCAGGTGGATGGGCTCGGCGGGGCTGAAATCCCCCCACACAGTGCTCATGTGCTCACACTGCCTTAGGGCTCTTTCATCCCTGGATCTGTGTCCAGGCCAGGCACGTGGGAAGATTTACTTGGAGTTCAGCTCCTCAGTTTCAAGCCTTTTCTCTCCCGTTTTCTCTCCTGTAG
Seq C2 exon
GATCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000211673:ENST00000390319:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0768612=V-set=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGATCCCTCTCTTCCT
R:
AGTCAGCCTCATCCATAGCCT
Band lengths:
308-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains