GgaINT0007909 @ galGal3
Intron Retention
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1276085-1279172:+
Coord C1 exon
chr15:1276085-1276202
Coord A exon
chr15:1276203-1279083
Coord C2 exon
chr15:1279084-1279172
Length
2881 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GGTACTCTTGTGTTCTACAGACT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GCTGTTACAGGATGACCTTGTGCTGAGCTTTTGTAGAAAAAACGAGACTTAATCATTCTTCAATGTGCATCATTCTGTTCAAATTTGATCCACGGCCGGTTTCAAAAAATGCCTACAG
Seq A exon
GTAAAGATGGCTGAAAGAGACCCGTTTTGTAATGTTTTGTACATTTCTTATAGCCTACGTGTGAATTACAAACTCAAGAGCTGTTACTTGGTGTTCAGTTATACTTGTGTAATGTCTGATGTAGATTTTCTCTATGGGAGTACTTTAAGGGTTCTCAAAGGGTCACGTACATAGGTTGTTTTGCACCTTGGTCAGAAGGCTCAGCCTCTAGTTATGGGCCTCGTGGTGGTGATCTGTCATGTGGTGCAGGATGCATCCTTCATAAAGTGTAATCTAGAGAATGCAGTCAAAATCCTGCATTCTCTTGTATCCTAAAAGCTAAGGGGAATCATGTTTGATGGACTATCAATTGCTTAATTGATCTTAATTTTCTCATTACTTTTTGTTAAGCAGAGCCTTGCTCTCTACCTCTCTAATAAATGATTCTGACCAGCCTTGCATGTCAGCAATAAGTACTGTGCCGTGGTGTTCTTAGTAGCTGATCTTAATTTTATTTCTTCAGTCAAAGGCGTAACTTCAGCCCACTTTTTCTTCCTTAACGCACCATAGCTAAATGCTTTTCTTCTTAGTTTTTACTATAGCTTCTTCACCTTTGTCTCAGCTTTCTGAAGAACATAAATATCAGCTGGAGATGTTGCCCAGTGTACCCAGTTCTCTGAACAGTGTTTAGCTGTGAGCCCTCTCTGTACTGTTCTGCTGCTAAGCGTACTTTTCCTGACAGCTCCTGTGTGTAACAGCGTATTTGAGCTCTGTTTACTTCACCCTGAGCTCATGGAACACTTCTCCCAGCCCTGAGGGTGTTTCTCTGACTGCAGACCTACTGTTATGTTCGTCCACCTCTAAAAAGACAATTACCTTTTACTATCCATTACTTTGTCTCTCTTGGTGTCTAACTGTTAAAAGTTGAAAAGACAAACTGGATCTCTTTGGCCAAACTAAGCAATGTTCTCCATAATGCTTGGGAGGGTTTCCCATCCTAGAGACTTTGATTTCCACAGCAGTACATTTGGCCACTTCTTGTGAGTGCCTAATTTAGCACAAAGCTTGCAGATGATCTTCTGAATGCATTAATGAATCCCTGTCTTCCTGTATGCTGGCAGCTTACTGTTCTGCCCTTGGTGTTCTCACTGTGGGCCTATGAGAAGTAAAGCTCAGTGCGGTGTAGCAAATGCTTTACAGTAGTCATTATTATTGTCAAGGTTACTGTACTGCCATTATGTTATTCCAAACTATATTGTGTGCATCTTAAGAATAAGTTTTAAATTTCAAAGCTATAATTGGAGTCTTTTTAAGGAACTGAATTTCATTGTATGGAATTGCTTTAATGGAATGATTTCTCATGTTTTTTATCTGTCTCAACGTTTATTTAAATCTTAATGAGTAAGCCCTAATACAGTTAATTTCAGCTATAAAATAGCTGAACAGGCCTTCTGCAATTTATTAGATGCCGAGGGTCACTTCAATAGTGTTGATTTTCAATGTGGTTATGTTCCACAAATGACTAAATGAAGATGCTTTGAGTGTACCAATCCTGTCTACTGGCCTTGTGCTAAGTGCCAAAATCTTTATATAAAATGAGAGATGGACTTTTTCCGGTGTGGTAGAATATTTCCCACTTTAATACTATTTAGGTACCATAAACAAATCGTGTTCGTCTTCACTCGGAAGAACTGGTCTTTCTCCTACGCATCCAGTGTACAAATCGCTTCACAAACACCGTGCTGAGCTACGGCTCCCACATTGGCAGATGCCTCTTAGGATCCTATTTCCAAATATGGAACAGAGGAAGCCAGACAAAGCGGTGACAGAAAACATTCAGAGTTATTTCCTGCTTCTGTGTTGTTTAAGAACTACCTGGTTTAGCTGGATATACAAAGAGTGGCAAAACACTTGGAGCACAGAATGACTGCAGAATGAAACGTGCTTACTAAGAAATAAGTGATGTATTTCATTCAGCAGCAGTTTTCAGTTGCATATTTCTTGTAACATCTGCCTACCTTCTGACTGAGCAACCTCCAGGGCTTTCTACAACTTGTCTGCTGCAAGGACTCTCATTAGATATTCACATCTTTTTTTCCTGCTGTTCTGAGATTATGCAAGCAACCACACCTGCAAAAAAGTAAAAAGGAAAAGAAATAATTACATGGGGGGGGGAAAAAACCCCAAAACAAAGGGGAACACTCACCCTCCACCCCAATATTTCTTGATTTTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTTCAGAAAAGCATGCTTTTCCCTTTGCATCTCTGCACTGTTGAGTGTGCTGTCTTCTCTTTGTTAATCAAATGAATTTCAGTCAGGATGGGCCATGGAGGCCATCAGGTGTATCTCTGTCCTGGGTACTTTCAGACAAAAGCATCGTATCTTTCAGCCACATAAATAGTGCTTTAATTGTTCGAGTTAAATTAAAAAATACTGTGGTTGCATGACCCTAACTAAAGATAAAGAACATGTTCTTGTGCTTCTGATAAGCTTCCTATAACCTGTGAGTTACCTTTAGAGTTCCTTGGGTTTTTTTTTTAAGCTTTTCATGTGCTGAAGAATTATAAGATTGCTTTTCAGTCTTAACTCAATCTCTTGCTTTGCAAGCATTTTTCTGTTCTTTGACATGGGTATGCACCTCATTCATGCAGTGAGATGGACTTGTTAAACCTCTCAGGGCAATGTGAAGGAAGGCTGTGGTTAGCTGTCATTCGGCTTCTATGCTGATAAACGTGAGATGCTGAGATAAAGGGTAGTTTAATACTTACAGTGAACTGTTGCTGTGGCAAAAAATATTCTTTTATATTCTGTTATTCTCTGTGTTATAAAATTCTTATTTCTAAGTACATACCTTGGTACTCTTGTGTTCTACAG
Seq C2 exon
ACTTATTCTAGCAGCTAATAGAGATGAATTTTACAGTAGACCATCCAAATCAGCAGATTTTTGGGACAGCAGCAATGAAATCCTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056:ENSGALT00000003199:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(30.5=94.7)
A:
NA
C2:
PF057427=NRDE=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]