RnoINT0147560 @ rn6
Intron Retention
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86815713-86824141:+
Coord C1 exon
chr11:86815713-86815806
Coord A exon
chr11:86815807-86824052
Coord C2 exon
chr11:86824053-86824141
Length
8246 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CTTGAACTTTCTTCTCCTAGGCT
3' ss Score
7.6
Exon sequences
Seq C1 exon
ACCTCGTGACCGTGCGAGCAAAGCCACCCCTGCAACCCATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAAAATGCGTACAG
Seq A exon
GTAACGAACGCCCTTGTTCTGCCTCTGCCGTGCTGCCCCAGGCCTGGGGTCCATGGTTGCTCCTCACCCCTGGGGTGCCATGTGTGCAAGAGACAGGGCAGCCTGCTGGCTGTGTGACCAGCCTCTGAGTAACCTGAGTCCTGGTCTCTGGAGCCTTGGAGACATCCTATACATGGTTCTGTTGTCTCGGACAGAGGCTGCCTAGCATGGGGTGCTGGAAGGAGCACCATCCTAGAGCAAGGGCTCAGAGCTAATGCGCAGTGTGGTGAGACGGAGGGATGAGGTGAAGTTCCATGGGCTGTGATTAGAGTCACATCTGAAGAACTGGAGTGTGGTAACAGTGAGCCGCCGGGTTGGGTTGGGGGAGGTGTCCGGCTGGTGGCAGACTGAGGGAAGCATCCATGGATTTTGCCTGGAGTAACTGAGTATCGGCTAAGGACATGGGAGACAGTAGGCAAGGATGGGAACTGGACGCTTCCCTGCGGGTGAAATCAGGCAGCACCCCCTTTGTTGGCAGCACCCCTCTGTTCTATAGCACATGCCAGCATTCGCTTGTCCATGTAGAGCACAAGAAAGAATGGGAAATGGACTTGGGAATCCCTCTCGTACATTTGTCTGGGGCATTTAATATGCGTTGCAGAAATAAAGTAGTTTCAGTGAGGTTCTCATGTCGAGCCACTTGGCAGAATGACAGACACCACCAGGCCTGGCACAGTGGCTGAACTCCCTCGTTTTAGTCTACTAGGATGTAGGGACTTAGTATTTTCTCTTCTACAGAGGACGAGCAACAGAGTTGGATCAGGCCGCAGGAGCTGATTCTAGCGCTCTGGCAGGAGGGTAACGAGAGACAGGGTCCATTCTGCACATGGAATCTTGCAAGGAAAACGATACAAACAGCTAGTCACATCACAGAGCTGTCTGGCGAGAACGGAACAGAGTAATGAGTTCCTGAAGAACGGAAGTGAGAAGCAGTTGCCACACTGTTCACACAGAGCAGCGCCCTATCCGCCACTCCCATATTATGTCACAGTGGGCTACTGGAGAGATAGCTCGCTGCTCTTCTAGAAGGCTGGGGTTGTTACCAGGACCCACGTAGCACTTTATAACCGTATGTAACTTGAGTCCCTGGGAACCCAGAGCCTTCTGACCTCCACACACACCGGGCACCCCAGTGATACACAAATATATATGTAGACAAAACAGCCATACATATACAATTAAAAAGGGGTGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGGATCCGATGTCCTCTTCTGGTGTGTCTGAAGACAACAACAGTGTACTTATATATAATAAATGAATAAATCTTTTAAAAAAGGTGGGGGGGCTCATGGATTGTACAGTTGTGACTCCTTGTGGCCAAGATGTTCTTCGGGTATCATCCGGCTAGATCCTGCTGGAGTCTACCTTCTAAAGTACCTGAAGTTATGACATTGGTCACAGAGCATGTGCTAGGCGAAGGTACCTGCCTATTGGTGCCACTTATATTGTGCATTGCTGGAGCTAAGACTAGGGGAACCCCAGGTTTCAGGAGCCTCCTACCTGTAAAAGCATCAAGTGTGTCTCCAGCGTCTTCTGTTAAAACCTAACTGTACCAGCAACCAAGCTGAACTTCATCTCTACAGCATAGGCAGTAAAGGCTGGGTGTGAGCCTTCACTTGCTAAGCTGGGAAGTGTCATGGCCCCTCCTTACTCTCCTTGGCCCTTATGCTCACGCAGACAGAGCCAGCAAAGACAAAGTCGTGTTTCTGTTTGGGGTGACACAGCCTAGCAAACAGTTCCGTAGTCTTAGGTGACATGTGGATCCTGGGTTTGGCCAGAGCCCGCTTGATAGTTTTTGTTCCTTGAAAACACCTGCAGGTAAAATTAGAATTTTAAGAATTTAAAATTTAAAAGAAATTGGCAAGTGGGGTCTAGCGAGATAGATGGGTCAGCAGTTAAGATCACTGTCAGCTCTCCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCGCAACCCTCTGTAATGGGATCTGACGCCCTCTTCTGGCATTTGGGTGTACATGCAGCAGAACATGCATACAGTACATTTTTAAAAAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAATTGGTAAATGTACATCGTACACATCAGGTAGTGAAGCCCTTTGTAAGCCCTATGTGTTGTGGCTGCAGACATGTGCCATCCCAGTCACACAGTGGGCTCAGGCAGGACAGGCAGATGGGAAGGAGGAAGAGGACAGACACACAGCAACAGAGGTAACACCGCTGCCATCCCCGTTCCTGGGGGTTACCCCATACTCACAGCCTTCAACCAGGCTCAGCTGTTAACAGATACACCCTGAGACATGGCCTGAAAGCTTTGTCTTGCTTTGGGTGGCTAAAGTTCTCCTGTTCCTCCCCCACAAGGGCATACTCAAGCCTGTGTATATGACAGGCTCCACCCACCTCAGACCTCTGCTTCATCAATCCTGGGCCTCACGGCGGCAAATCATCACCTCTACGTCTAGTTAGTCCGAAACCCTTAACCTTGACCCAGTCAACAATAGGATAATTAAAAAGCTGGCTTAAAAGACCTGAGCCTTAAATGCCAATTGGAAGCCAGATGTGGCTCACATCTGTATTCACAGCAGTGGGGAAGCAAGCAGGAGGATCAGGAGGCATTCGAGGCCAATGCAGGCAACATGAACTCTGGAAAAAAAAAAGATCATAAATCCAGGCGTGGTCCTCAGGTCTTACTGTGGCTGTTGCAGATGGCATTTGAAGTGGGAGAAAAGTCTTCTATGTTCTTATAAAGTCAAACCACCAAGGGCACAAGTACTTGACTACAGCTACTGTGGTGGTTTGAATGATAATGACCCTATAGGCTAATGTGTTTGAATGCTTGGTCCCCAGTTGGTGGAACTGTTTGGGAAGGATTAGGAGGCGTGGCTTGTTGAAAGAGGTGTGTCACAGGGGATGAGATTTGAGACTTCAAAAGACTTGAGCCACTCCTAGTAACTCATTTCTGTCTCCATCTTGTGGAATAAGGTGTAAGTTCTCAATGTTCCTGCCAGCCTTGGCTTGGCCATCATGGACTCTAACCCTCTGAAACTGTAAGCCCCAAATTAAACACATTCTTTTATGTTTCTTTGGCCACGATGTTTTATCACAGCAATAAAAAAGAAACTATGACACATAACAACCACAGGGTGTTATGGGGTAAACTGTGTCCAGGTTCTTATATTTAAATTCTAACTACAGGGGCTGGAGAGACGGCCCAATGGTTAAGAGCACTGACTGCTTTTCCAGAGGCCCAGAGTTCAATTCCCAGCAACCACATGTTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGCGTGTCTGAAGACAGCAACAGTGTACTCATACATAAAATAAATAAAATCGTTTTTAAAAATCAGAAAATATAAAAAAAAAATTCTAACTGCTGCTGGGTGTAGTGGTGCAGGCTTTTAATCTCAGCACAGCAGAGCCAGAGCAAGGTGGCTGTCTCTGAGTTCTAGGACAGCAAGAGGTACAGAGTGACGCTATATCAAAAAACCAAAAAATAAAAAATAAATAAAAATTCTGACTGCCAGTATATCAGAATACAACCCTCTTTAGAGGTAGAACTTCAAAGAAGTGATTAAGGTAAAATGAAGTTACAGGGGTGGGCCTGCCTTGATTCGATATGCCGAGTATCCTGAGAAGAGACAAGAATACAGACACACAGAAAGAGGCTGCTATCATCAGAGAGATAGAAGTCAGGGACCTCGGTGGAAGATCCATGCTCTTAGACTTCCAGCCTCCCCAGCTACTAAGACAATAAACTGCTACTGTCGAAGCCACCAGCATATGGTGATCTGCGATGGGGCGAGAGTCGGGCGCTCAGCTATCAACATACAGGTCTGTGTTTCTGACGGAGATGAAGATGATCTCACTAAATCAGCCCTGGGAAACAGAATAAAAACAAACCATATTTTTCCAACTCTGTGGGCAAAGCTCACTTCAGTAACTACTTCCATTCCAGCTGCAGGGATGTCCAGTAACGGTGGCAGGCTGCAGCCCCCAGCCGTCACCATCGGCACAGCCAAGCAGCCTTCTGACTTGTTCACTAAGAGGACAAGTGGGCAGTGCTGTAGATCCCTGCCGAGATTCCCCCAAACCACAACCCCTAAAGATCAGTACAAACACCCTAAAGTCTCCCAGGTCAGAATCAAAAAATATAAAACTGGAAAAGATGCTTGAAATTCGTGGGGCTTAAGGTACATAAAACTCAGTAGTAGAGAATTAGCTCCAGTCCTTAACACTGTGAAAGAAAATACAATAAAGCAATTATTGACCCCAGGACCTTAGTTTAACCTAGGTAGCATAATGCCTTCTACGGGAATAGGTCAGGTCAAACGTATAAGTAGTGCTTATCACTATGGCGGTAGTTGCGTTTACCTCAAAGTCTCTAACTGATTAGGTTGTCTGTAAGAGTATTTCATATAAACAGCTTTGACAAGATTGATCAATAACCACAGTGAGTCAGTGTAGCACATCTATTCACCCAAAGAGCCATGATCTGGTGAAACTTGCATTCTTTATAAATTTAGATGCAAGCATGTCCCCTCATTTCCTGGGGAAATGTTAGTGTTTCTTTCTCTCCCATGCACAAAGCTAAAAATGATGCATTCTAATTAAAGATGTGTTTCATGAGCATGTGGCGTGCTTGCATGTCTGTAGGCACTCTTGTGTGCATGTGTTTGCACACATGCATGTGGAAGCCTGAGGCTCATTTTGCAAGCCCTGTTCAATCACTGTCTGCTTTATTCACCGAGACAGGGTTTCTCAATAGAATCCAGAACTTGCCTTAGAGGCAGCCCATGGTCAGTTTGCTCCAAGGACTGGAATTGCAGACAGGCCACCATGTGCCAATTATAAGGGTGCTGGAAACTTGAACTCAGAGCACAGACGGACCTTCATAGGCACTACAGTCCCTCCATGTGTTAGCCGAGAGTCGTTTCCGCTCTCACCTAGGATTTGAGGTGAGCACTTATCTCTCAGTACATCCCTAAATTACAGAATCTCTGCAAGCCATCAGCATGTAGTGTTCTTGAATAACTAGGCACACACATTTCCTGCTTTAAAATATGTCGTTGAGGGACTGGAGAGGTGGCTCGGCAGCTAAAGCAGTGGCCGTCCTTCCAGAGCACTCAGGTTTGAGTCTCAGCACCCACATGGCGGTTCACAGCCACCTGTAACTCCAGTTCTTGATCTGGCCTTGTGGGCTGCATGCAGGCGATGCCTTGACATAATGGTGCCCATGTACAAAGTTCAAAAACAAGGAGCTGAACACCTAGGATAGATAGGACTCTGCTTAGGCAGCTTTTGTCACCCCCCCCCTTATTTATTTGTTTCACGTTTCATTTAATAGAGTTACGTCAGAGTCAGTTCCTGGGGCCATGGTCCTGGCCTGGCTCTCAGGGCACTGCTTGTTGAGAACACAAGTTACCAGCAGGGACTGCCTGGTTCCACTGTTCCCCAACTAATTCATTTTCCAGAGTCTGGGACACAAGAATAGAGAGGGAACACTAGTACTTGAGCAAAAACCTTGAGCATGGCCGGGAAGAAGCTGACCCCACCCCTGGGAAAATGGGGTCTCTTAGCCCAGTCCATGCATCTTCACTGCAGCCCATGCCTTGGGTGCTATGGTTTCTTCCTCCTAGCCCCTGCAGGCTGGGCTCAAAAATGTGCCCTTGTGAACGCTGGCATTGCTGACAACACAGGGAACATCCCTACCCCAAAGGGGGCAGCACCGAACTCGTTTGTTGAAGGTCCAGAGTTGTTCTGAGTGTCTGTGTCTTTATCAAGGACAGTGATGACCTCTCCCTACCCTAGATGACTCTCCTGGAAGCGATAACTGGGACAAGGGGGGTAGGGCAGTCTGGACGTGGTGAGGCTTCTACAGGAGAACCAGACGGTTCTGGTTTGTAGAGCTATTCTACAAACAAGGTAGGGTAGTCTCCCAGAGGATCCCCATGCCCCAGGTGCTACTGGCGTCCAGTGTGTCCTCAAGCTCCTTTTGATGGAAGTTCTAGGTGTGCTAGGGGGTTTGCAGTGGACAGGCAAATCGGTAGGAGGAAAGTGCCCCACCCCAGCTTGACCCCTGTGTGCTTGGTAATACTGTGAGGAATCCTTTACTGGGCTGACACTTTTGGGGTATGAGATGGAATGAGGCTGTCCCACAAGACCTAGTAGATCAGGCAGAGACCAGAGATGCACCTCCATTCTTCCATGCTGCCTCCTGCAGCAGCCTGGAAGACATTCACTCAGGTAAGATAGTAAAGTGTGATAGTGTGGTTCTTCTTCTTTCTTTTTAAATTTAGATGGAGGTTTCATTGGGTAGCCCTGTCTGGCCTGGGACTCAGAGATCTGCTTGTATTTGCCCCTCTGCCTCTGCCTCTCTAGGCTTGACTTCACCACTGGGGGAAAAAAATCTCAGAGTGACTCAGTATGAAGCAAAGCTGGGGTTTATTGAGAAGAGATTTTAACACAGGTATGAGATAAGACACACCCAGGGGCAAAGGTGGGCTTTCCCGGAGAGGCGTACTTCAGTGTCTGCAGTGTATGAGAGTTTGGTCCTTCTGAAGGTACATCTCAGAGGTGCATGTAGATTCCATGCCTCCCGAAAAAGTGTCTCCAGGATTGTAGAACTCATACAGTGGCTCCTCAGGGGCACTGGGTCAGAGTAGTTGACAAAGTAAAGATCACATGGGTGACAGGGAGGGTGAAGTTACTTTTACTGTAAACAGATTTCAGTTTTATTTGTGACGTTCTCAGCAAACTTCATTAACATCTGGGTAAAGTACTAAGACCACGCCCATGGGCCTTAACACGTAGTTCATTGCTGATCTGACACTTTTTTTTAAGATATATTTATTTTGGGGTTAGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAGATATATTTATTTTATGTCTATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGGATTGAACTCAGGACCTCTGGAAGAGCAGTCGATGCTCTTAACCACTGAGCCATCTTTCCAGTCCTGATCTAACATTCTTATTTGAAAAGAAATCTGTATAAAAAGAACATTGTCTTTATGTAGGCAATCTTTTTTTTTTCTTCTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGACCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTGTAGGCAATCTTTTAAGAAGATTTATTTTAATTATTATTTTAAATTATTTATATTTATAATTTAATTTTATAAAATAAAATTATTATTTTAAATTATTTACAAAAGTACAGGTGCCCACAGATACCAGATATGTGGAGTTTCCTGGAGCTGGGACAATTGTGAGCTTCCTAGTGTGTGTTCTGGGAACTGAATTCTGGTCTTCTGGAAGAGCAGTTCAGGTTCTCCCCCCCCCCCCCCCAGCTGGGGATTGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCTGCTGAATCACCTCAAGTACCTGCCCGATGTCAGCAGTCTTGACAGTGAATATTCATTTTACTAGAATTCTCAGCTCTGAGTTTGTGACATCCTTCAACCCTCTCCATTCCCACAAACCCCTCCCATGCCTCCCTCATTTTCTTTATACCCAGCCTCATACTTTCTCCCATCTCTTCCCAGCACCAGCCTGTCTCCTGAGCAGGGGCCCTCTGGCTTCCCCCAAGCTGCCTAGAGCTCCTGTGGATTTATGGTGGGGTTCCCATTCATGTTGCTGCTGTTGTAGATTTGATGTTAAACGAGAGGCTGCAGGCTCCATGGTGGATCACATGCAGCAGTCCCCAGCACATGGCTTCCCTTGAACTTTCTTCTCCTAG
Seq C2 exon
GCTCATCCTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGGCAGACTTCTGGGAGAACAACAGCGAGATCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245:ENSRNOT00000046594:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(6.6=94.7)
A:
NA
C2:
PF057427=NRDE=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]