HsaINT0023200 @ hg38
Intron Retention
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20036760-20043443:+
Coord C1 exon
chr22:20036760-20036854
Coord A exon
chr22:20036855-20043354
Coord C2 exon
chr22:20043355-20043443
Length
6500 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GTGATGCTTTCCTCTTGCAGGCT
3' ss Score
11.21
Exon sequences
Seq C1 exon
ACCTCGCGACCTGTGTCAGCAGAGCCGCCCTGCACCACCATGTGCATCATCTTCTTTAAGTTTGATCCTCGCCCTGTTTCCAAAAACGCGTACAG
Seq A exon
GTAACCCCCTCGCTCTGCATCTGCTGCGCCCTGCAGGGTCCTGGGTGCCCAGCCAGTTCTCATGCCACCCAAGCTGCTGTGTGCAGGAAGGTGTGTGGGCCAGGACGGGGCTGCACAGGCCTGGCACTGCCCTCCAGGACAGGGTCACTCAGTGTGGGATGCTGTCAGAATGCCTCTCGGGGCGGGGACTCCAGTCAATGTACAAAGACGTGAAGACTCAGCCACAGAAGGCAGCCACAGGTAGGACAGAGGAGTGACATGGGTCCAGGTGGGCTGCAGTTCTATGGGCTTTGAGGAGGGTCGGGCGGCAGAACTGGGACAACGGCGTCAGTGAGTGAGAGCCAGCTTGGGCTGGCGGGTCACAGCTGCTGGTGAGAAGTCAAAGTGGCGGCCAGGCTAGGGGTCTGTGGGTGGGTCCTGAGCTGAGGAAAAAGAACCTGGGGAAGAGGGGACGCTGAGGACCAGCCAGAGGAGTCAGGAAATCGAGGCCAGAAGCCACCCCTGACCCTGGACTCAGGACGGCCACACCTCCATTCCCCAGGACACCCCAGCATTTATCCACACAGAGAACGAGGCAGAGATATAACCCACATCTAAAATGAAACGTGTAACCACTCTCTAATGCAACTGCTCGGGAAGTTTTCATCATTTTAAAATCTGTACCAGAAATGATTTGAACCATTTCAAGAGGGTCTCAGATTTGAGTCACTGCAAAGTTGCATAGACACCATGCTGCTTGACTTCAAGGCTGAGTGAAGTCATTTCAGGCCAAGGAATCAGGAAGGAAGGGTGTCTGGTGTTTTCCCTTTTTGCAGTTGGGTGAGTGGCAGGTCCCAGCAGCAGACAGCATGCTGCAGGGAAGGTGGAAGAAATGTTAGGAAAGAACTATTGACTGCTACAGGGACTGGAGTAGTGTTGGGCTGGCTAGTGAGTGAACAGAACTCTAAAGAATGTAGGGGCTGGCCGAGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACAAGGTCAGGAGATCCAGACCATCCTGGATAACACATCTCTACTAAAAACACACAAAAAAATTAGCTGGGCATGGGGGTGGGCGCCTGTAGTCCCAGCCACTTGGGAGGCTGAGACAAGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCATGGGCAACAGAGCGAGACTGCATCTCAAAAAAAAGATGAAGGTAAAATAAGGTCATGTGGGTAGGCCCTAATCAATGTGATGGGTGACTCAGATACGCACAGGGGAAGCTGGTGTGTATACAGAGATAGAAGCAGTCGTCTGCATACCGAGAAGACCCTCAAAAGGAGCCAGCCCTGCTGACGCCTTGATCTTGGATCTCCAGCATCCAATGCTGCGAGACAATAGTGTCTGTTGTTGCAGCCGCCTGGTCTGTGGTGCTTAGTTACGGCAGCCCCAGGAAACTAGCACGCTGAGGAGAGCCAGCCAGCTCTGTATGCGTTTCAGGGCTGCCTCCTGCAGGCTGCTGAAGAGACTCAACCCACCCCGAGTGCTCCCATCTCTGGAAAGGAAGCTTGATGGCTGGCCTGCGGGTGCTGGTCAGTGCCACCCAGCCCCTTGGGTGGAGAGGAGGAGGGTTGACATGGGCCCCTCTTGCTTTCACTCAGAACCCGTGTGTTGCTGCCAGGACCTGTCCTGCGGGTCCTGCCATTCCAGTTGGCCTCGGGATTTCTCTGGACTATTTTCCGAAGCCCTAAGCCAAAGACGAAATGTGCCACCTCTGGGTGACTGAGCAAATGTGCGCTGTGTTTTCCTGACTTCATGGGAGGGTGTGAGACACTTCTGGTGGCTGCTTCTGCTCTGCCTGTGGGGTGTCCAGCCAGGGGAAGGGCACGCTGCAGGCTGGGAGCACAGACACTTCTATGGAGCCCCTGACAGCACCTCTGCAGCACTTTGGGAGGCCTCGTACAGGTACCCAGCTAGGCTGGGCTGGACTCCTCACCTGTGGACTGGAGTAAAAAGTAGGGTGCTTTAGGCCACTATGTTTTTTTTTTTTATTATTATTATTATTATTTTAGAGACAGGATCTTGCTCTGTTGCCCAGGCTGGAGTACAGTGGTATGATCATAGCTTACTGCAGCCTCAAACTCGCCGGCTCAAGCGATCCTCCCACTTCAGCATGCCTAAGTAACTGGGACTACAACACCATGCCCGGCTAATTTTTTTTTTTTTGGTAGAGACAAGTTCTCACTATGTTGTCCAGGGTGGTCTCGAACTCCTGGGCCCAAGTGATCCTCCTGCCTCAGCCTCCCAAAATGCTGGGATTACATGCGTGAGCCACCATGCCCGGCCTCGGCCACTGTATTTGGTAATTTGATACCCATCACGGAAAACCAAGACCCTGCAGCAAGATAACACAATCACTTCATGATGTCACCCTATCTCTTTCAAAACTGCCTGTTTACAGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCTGGCATGGTGGCGCACACCTGTAATCCCAGCTATTAGGGAGGCTAAGGCAGGAGAATTGCTTGAGCCTGGGAGGCAGAGGTTACAGGGAACTGAGATAGCGCCACTGCACTCCAGCCTGGATGACAGAGTGAGACTCCATCTTAAAAAAAAGAAAAAACGAAAAAAAACCTGCCTGTTTACAGCCCCACGTGATGCCACTTGCTGGCTTCAGCCTAGAGTGGCTGCAGGACAAGCTGTTACTCCATGGGACAGCTTCCATGGGGTCACCACTGAGGGTTTGATCACTGGATCTCAGGCCAGAGTACCTCCTATCTGTCACCAAACTGTCCCCCAGACAGTGCACACACTCACCCCCCGGCAGAACACACTCACCCCCCGAGATGATGCACATACCCCCCGGACAGTACACGCACTCACCCTGCCTAGCAGCGTGGGTGTCAGGTGGTGATGGATAATTAGTGGTTTCAGTTATTGGAACAAAATAAAGCCGAGGTGACTTGCCATCCTCAGGGACCTCACCGTGGTGGGTGCATCCCTGTCTCTCTGGACGTGGGGCGCAGATAGGCTTCTACCCATGTGCAGCCCCACCAGTGATGACTGAGAGAGCTACTTCCTCCTCCCTTTGGGGCTTGATCTGGGTGCTCAGCATGCTGGCTTGTCCCTGAATTATGTATTCAATGAAATCCCTGGCAAACCACCAGCAATTCAGCTAAACATGACTGCTGGAACAAAAATAACCTGGCAATTAATGTTCCTGAGTTATTAGGCAAACATATATAATTGCTCCTTGTTTAAAAACAGACAGCTGAACATCTTAGGACAAAAGTCCATGCTCAGTCAGCTTTTCTTCCTACTTTTCTCCCCTTTATTTTCCCTTTGTAAGAGCATTATGTCAGAATCAGCACCCGAAGCCAACAGCCCCAGCCTGGTTTGGGGCTGGACTGGGATGAGGTGTCCCTGGCTCCCCCGACCCCTGTTCACCTGCAGGGCTGTGGGACGTGGAAGCAGAGGAGGAAGGTATTTAAGAGAGAATGCTGAGCAGAACCACATGGAGCTTGACCCCACCCATAGGGTGGAGGAGCTGTCATCCCAGACCCTGGCACATCCCCACCATAGCACTCAGGGACTGCGGTGTTCCCCCTTCTCCTGCCCGCTGGCCAGGACACAACCAATGGGCACCTACAGGACTGGCCCATCCAGGTCTGGGGCAAGTGCACTGCCTTCTACTAGCACTGTCCAGCCCAGGGAAGGTGGGCTCTCCTGCCATCCCTGCTGCAGAGGTTGGGGGGCACTTCTGCCCAGAAGGGACATGGAGACTTGGGCTGGGTCTGGGTTGAAACATGGCAGTTAGAGGTACAAAGGCTGAGGCTCATCAGGGACAGAGACCACCTCCCCCTACCCCAGGCAGCACATCCCTGAGACCTGGTGCAGCCCTGGGGCCAGCTGGGTGTCAGACCAGGCTGAATGGGGCACCCTGGAGGTGGTAAGGCTTCCATAGCAGACCCCAAGGGCTCTAGGGCATGGCACAGTCCCTGGCAATGACCAAAAGCATTTCCCCAGTTCTGCTGGCAAGAAGCTTCAGGGGCAGGCACTGAGTGGGGGGCACACATGTGCACACAGGTGTGAATGCCTCCAAGGGCATGAATGGTGGGTGCTAGCACCATGTACTTTTTTGTTTGAAATGGAGTTTCGTTCTGTCGCCCAGGCTAGAGTGCAGTGGCACGATCTCAGCTCCCTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCTGCCTCAACCTCTCGAGCAGCTGGGATTACAGGCGCCCGCCACCACACCCGGCTAATTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACTCAGGCTGGAGTACAGTAGCATGATCTCGGCTCACTGCAAACTCTGCCTCCCGGGTTCACACCATTGTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTACCGTGTTAGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCTCCCACCTTGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACCGGGCCCGGCCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCCACCTCGGCCTCGCAAAATGCTGGGATTACAGGCATGAGCCACCGTACCCAGCTGTGAGCACCACTTTCACTCCCAATTTTATGAATGTCTGTTATTTCACATTTAATCAGGAGCAAATGTTGTTTTATGAAATTGATGTGCAATGATCAATATGGAAATTATTTTTAAACACTTGTCGGGCTCTCACCACTGCAACTTGGTTTCAGACTCAGATTGTGATGGCAGGACAGCTGAGCTCTGCTCCTTGGAGCTGCCTCTCCGGCACAAGTGCTCAGGGGGTCTTCAGCCATCACTTTTTTTTTTTTTTTAGAGACAGGGCTTCTCTGTTCCCCAGGTTGGAGTGCAATGGTGCAGTCACAGTTCACTGCAGCCTCAAACTCCTGGGCTCAAATGATCCTGCTGCCTCAGCCTCCCCAGTAGTTGGGAATACAGGCATGCACCACCACACCTGACTAATTTTTGTATTTTTTTTTTGTAGATATGGGGTCTTACTTTCTTGCCCAAGCTGGTCTCAAAACTCCTAGCCTCAAGTGATCCTCCCACTTTGGCCTCCCAAACTGCTGGGATTACAGGTGTCATCCACTGTGCCTGGCCCAGCCATCGCTTCTTAGACCCTCAGGTCTAATGGACATTGCAGGAACTGACCCCTTCCACTCAGTCACTGCTGTGTCCTTATTTGTTTTCTTCTAATGTCCAAGCTGGGACTTGAAAGTCAGTTTTCTTTCCTCAAGACCAGGGCTCTTAAAGTTTAGATGTCTCTCCTAATTCCAAAAGAAATATTTGTTTGATTAGGCTGGATGTGGTGGCTCACACCTGTAATCCTCCGCCTCGGAGGCCGAGGCGGGTAGATCATTTGAGGTCAGGAGTTCAAGACCAGCTTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCGGGAGAATAGCTTGAACCCGGGAGGCGGGAGTTGCAGTGAGCCGATGTCACGCCACTGCACTCTAGCCTGGGTGACACAGAGAGACTCCATCTCAAAAAATAAAAATAAATAAAAATGGAAATATTTGTTTGATTCATAATGCAAAAAAACTAGTAAAACAGTGAAGTTCCCATCCACTCCCAACCAACCCGAGAAATTAACTCCAAAACACACAGAATGGAGCAGCCCTCAGAGGCCCACATGCTGTGCCATTCAATCTGTATCCTTGAGCTCACGCTTCCAAGAGCCCACGGGTTTGTTGTGGGTGTTCCCAGGGCTGGGGACAGATGGACAGAAGGAGGAACAGCCCCCCACCCTCCAGCCTGGGCTCCCGGCATGGAGCCCAGGCTCCATGGTGCCCCTAAGGGCCTGGCAGACCCGTCTCCCGCCATTGAATGGTGTGGATGTGTGTCCCTGCCTAGCATCCTCCTGTTTCCCGTGCGGTCCCAGCTGCAGGCTCCCGAGAGCTCACCTGGAGCCACGGTGCTCCTTCCTCCAGTGTGGGTGCAGCAGGACTGCCGGCTTCCTGCCCTCTCTGAGACTGGCCCTTGTTGCCACTGAGGCCAGTTTTGTGTGTGAAAAGAGAAAAAGACTTGGCTCGCTCGTTTCCATCTGAAGCCATCAGTGATGCTTTCCTCTTGCAG
Seq C2 exon
GCTCATCTTGGCAGCCAACAGGGATGAATTCTACAGCCGACCCTCCAAGTTAGCTGACTTCTGGGGGAACAACAACGAGATCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597:ENST00000401886:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(20.0=94.7)
A:
NA
C2:
PF057427=NRDE=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development