GgaINT0008624 @ galGal3
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8866230-8867922:-
Coord C1 exon
chr15:8867815-8867922
Coord A exon
chr15:8866291-8867814
Coord C2 exon
chr15:8866230-8866290
Length
1524 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
GGGTTTTCTTTTTCTTTTAGAAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCCAGCCAGCTGGGAGTGTACCGGGCCTTTGTGGATAACTATGAAGTTGCTATGGAGACAGCAGAGAAATGCTGCCAAGCCAATGCTCAGTTTGCTGAAATCTCTGAG
Seq A exon
GTAATGTCACGGTATTCAGACACATGAGCCATCTGAATCTGACTAATACCCTGCAATGTCACTTATCTATTCTCCAACAATCTTTGCAGCCCTGACTTCTGGAGGAGTTATGAGCTCCCTTAGACTCACTGCTTCAGCTTGCATTCTTATGTTTTATATTTTGGGCTAATAGAGGTTATCATATAGGCTGCCTTTATGTGCTGTCCCTACCCAGGAAATCCTGTCATAACAACTGACATTCCTGTAAGCTTTCCAGCTCTGTGCCACCTGCATGCATTTCTGGAGGGGACAGTTGTTATTTGAGCTTCTCAAATATTGTTCTTCCTAATGACGATACTGACTGCATGTAAAAAAGCCATCTTTAATGGCTTGCATTATGTCCATCAGTGGAATTGCAGGCTTCACTGGTTTGGAGAAGAGGAGAGAAAATTCTCTGTTTAAAGTGGCAAGTGCGTCAAGTATAATCTAGATGATTTACCAGCTGCTCCGATTTCCTATAAGAGGAGTAGTTTGTGTGAAAACATTTTGAAGACTTCTTCCAGGCTTCCCAGGCCACCAGCTTTGCCTGCAGTGCATGGTCTCCTTAACTGTTTGCATTGCAGTGATCGTATCTTGAAGAACTCAGTTGCCAAGAAAACGTGAACTTCTTATCTGTATCCTTAAAAACAAGCAAATAAATAATCAGAGCTGAATGATACTGATGGTGTTTATTGCTCTGAAAAAGCTGTTGAGTACATTCACTATTGCACGCCCCTTTAGATTTTTATGATAAAGAGGTAAAATGAAACATTCCCTCTGTGAAACAAGGGAAGCAAGTCTTGCCTGTTGGGATCTGATGTACTACTCAACAGAGTGCAAGTTCTTCTATTCTCTCCGTTACTGAGGGTTTCCATTGGATTCTGATCCTTTGTCTGACCACTTCTTTGCTCCTGTGGTGTCAGCTTATTAGCAGAGTATCTTTCTCTGCGCTTACTTTTCTCTCAGTACTGAAATGCATTCCACAGAATTTCCCATTTGTAGCAAAGTAGCAAAAAAGAAAAGTCACAGGCATTGTTCCTTTTCTGTTGTGAATGAGAGCTGACTTCTCCAAGGTCACCTAGCTCTGGGCATAGATAAGGATAATCAGGGGGTGCTAAATCCCAATGCTGTACTTTATTTATTGGTGGTGTGTACATGCTATGACAATGGCTGCATTGTTATGGACATGCCTTTCTCTTGCAGGTGATTAAAAATTCTACCATCCCTGTGCTGCTGTAGGTGGTTCCCTCTTTTGTTGCTTCTGTATTGATGTGAACTCATAAGAAATCTGATTATTATTTGAGATGTGTAGGTGCCTGTGTCACAGCAACGGTGAAATTATCAAGAAAGCAAGCATATTTTTTCCTTCACTGATTTGAACTGTGACAGGACTGTCCTCCAGTCATTCTTTGGCCCTTCTTTGGAGGAGCAGATAGTCTCTTACATTCCCATGTGATATTTCAAGGTGATTGACCATCTGCTACGTGGGTTTTCTTTTTCTTTTAG
Seq C2 exon
AATCTAAAGGCTAGAAGCACAAAGGAATCTAAAGATCAGACGACGAAAAATTCCTTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.5=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(10.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]