GgaINT0010701 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2603961-2605185:-
Coord C1 exon
chr20:2605087-2605185
Coord A exon
chr20:2604065-2605086
Coord C2 exon
chr20:2603961-2604064
Length
1022 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGTGTGTCTTCCCACAACAGATA
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATCTTCTGGAAAAATCAAGAGTGATTTTCCAGCAACCCAAAGAGCGAAGCTACCACATCTACTACCAAATCCTCTCTGGGAAGAAACCAGAGCTGCAAG
Seq A exon
GTAAGGTGGCCAAAGCTACAGCTTAGCCTTTACAGTGTGACAGCTTGAAGATAGCCAGAAAGAGCTCTGTTTTGAGTGTCAGGGTCCTGCTGACCACAAGGGCTGAGCAAAACCAGCTCACCATACAGGTCGGGCCCTCAAATGCTTTGATGACTGTGGAGGATTGTAGGATTTTCAGATAATTCAGGGTAGAGAAACCAGTAGCTTCAGTCTGAAAACTAAAGCCCTTTCTGCAGCTGTCTGGGAGTGGGACAGTGGTCACTGAATCTGTCTGCAGGGTGGGAGTGCAGCTTGTTAAGGTGCCTTGCACAAAAACTCCTTGTTCAGTGGCTCTGCACTGACCTCAGCACGTGCGGGTGGGATATCTACTCATTTTGGGATAAGGGAAAGTGTTCTGCAGTCTGCTCTGGGCTCCTCCTGCCACCCTAGAGGGATGATTTTCTTTCAGGTGAGTTTGCAAACAGCTGCACAGCTCTCTTGCCGCAGCAACCCATGTGGAGACATATCCTAAATGTGTTCCCCAATACAGTCCCAGCTGACCCTGAATTTGCTCTGGAGCCACTCTTGTGTGCTGGGCAGCCCTGCCCTCCAGATGCCAGGCTGCACAGAGTGCTCAGGAAACCTTTCCACACTGCAGAAGGATGGGTGGCACGATGCCCTGGGGGGGTCAGCCACTTGGCTGCAGGCTCTCGAGCCCTCTGCTGGCTCCAGAACAATACCTTATTAGGCAGGTCTGGATTGCTGCACTGCGCAGTAATCTTATCTGGTGGTCACAAGGACGTGGATGGCCACTTCTAAATCAGTCTGCAACAAAGCCATCTCCCAAGATAGCAAGCAGGAGGAACATCACAGAGAGGTGGACACATGGGAAGGCCTGCCTGGGCTCGCAGAGATTGTCCTGCTGGTTGGTGCCATCTAGTTGAGGCCGGCGTGGTCTTACCTCTTCATCTGTGTCCAGTGTTGCCCCTTCTGCACCAACTTTGTCACTCTGGCCTCACTTCATGTGTGTCTTCCCACAACAG
Seq C2 exon
ATATGCTGCTGCTCTCCCTCAACCCCTACGATTACCACTTCTGCTCTCAGGGCGTAACAACTGTGGACAACTTGGATGACGGCGAGGAGCTCATGGCAACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGAGTGATTTTCCAGCAACC
R:
ATCTGTTGCCATGAGCTCCTC
Band lengths:
190-1212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]