RnoINT0096549 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151133382-151135046:+
Coord C1 exon
chr3:151133382-151133480
Coord A exon
chr3:151133481-151134942
Coord C2 exon
chr3:151134943-151135046
Length
1462 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCTGGGGCTCCTGTCCACAGACA
3' ss Score
9.36
Exon sequences
Seq C1 exon
ATCTCCTGGAAAAGTCTCGAGTGATCTTCCAGCTGCCCGGTGAGCGTGGTTACCATGTCTACTACCAAATCCTCTCCGGGAAGAAGCCAGAGCTGCAGG
Seq A exon
GTGAGGATCAGGTTGGAAGGTCAGATCCCAAAGACCCTGCCTGGCCCCTATCAGGCCGGACCCTGGGATAGCTGTTCACCCTCTCTGCAGAGGGACAGGGTACCTCCACTCTTCTGGAAGCACAGCCTGTTTGCCCCCTACCCTCTTCTCTTACTGCTTCTGATCATCTCTAAGCCCTCTTTTGCTTTTTATTTACTTTTTTGGTAGTGATTGTTACGGGAGGGGGGTGCGCGTGCACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTATGCAGGGTAAAACAGGCCTCTTAGCTCTATTGTCCTGCCAAGATTGTAGCCGCCCATCCTGAGACTAGAACCCCCACCCAGCACCAAGGGAACCCGGTGGTACTCTACCCACTCTCACTGTTGAAAGCCCTCTGAAGGCAAAGCATCCTCCCTTGTCCTGGTGTCCAGGGGTAGAGCTGACTACACAGTCATCAAAGGGTCACAGTGGTCAAAGAATGAGTGAGTCTTTCGGACTGAGGGGCATTCCCCGGAGAACCGTAAAGAAAGAGACTCATGCCCAGACATGCATATGAACTTGAAAAACTAAAGGGGGCTGGGCTTGGTGGCACGCAACTTTAGTCTTAGTACCCAAGAATCAGAGGCAAGCAGAGCTCTTGAGTTTGAAGCTAGCCTGGTCTACATAGTTCTAGTCCACCCAGGGCTATGTAGAGAGACCTGTCTAAATAAAATAAAATAAATATGCTAATAAATAAAATAAAAATGGAAAAGAGCTAAGTACTACTCAGTGATAGAGAACGCCTATCTAGGAGGCTCAAAATCCTGAGTTCCATCCCAATCACGCATATGCACACACATGCCTGCACACATGCACACTCGCACATATACTCTCACACACTCACACATATTCTCTTTCTCACACATATGCGGGCATGTACACATGCATGCATGTGCAGACACGCACACTTCTATTTCATTCTCACACACGCACACGGGCACACACACATGCATTTACACATGCACACACATTGACTCTCACACACTTGAGCACACATACACACACACACTCACACATATACTCTCATACACTCGCACAGTCTTATACACGAACACACGTTCTCTCTCACACTGACACAGCTGTAAAAAAAGAAGCGACCAGAGGGCCACGCCTGCAATTCAAGGACTTAGGAGCTGCAATCATCATAGGATTGTGAATTAGGGCCAGCATGGGCTACGTAGAACCTGTCTCAAAAGACTAAATAAATAAAAGTAATGATGAAATAAACCAAAAGCCCCATGTGTGGATCACAGGGACCAGAAGCTCAGGTTAGAGAGAAGCCCTGGGAAGGCTCAAGACTCTTGCTGTGAGAGACCCCTCTCCTCCGGCCTCCTGGTGGGATAGGAGACGGAAGGCAGCTGAGAATTCAGCCTAACTCACCTCCTGGGGCTCCTGTCCACAG
Seq C2 exon
ACATGCTGCTCCTCTCCATGAACCCCTACGACTACCACTTCTGCAGTCAGGGGGTCACCACCGTGGATAACATGAACGACGGGGAGGAGCTTATCGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGGAAAAGTCTCGAGTGA
R:
ATAAGCTCCTCCCCGTCGTTC
Band lengths:
192-1654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]