GgaINT0010709 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2598142-2599841:-
Coord C1 exon
chr20:2599765-2599841
Coord A exon
chr20:2598230-2599764
Coord C2 exon
chr20:2598142-2598229
Length
1535 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCCCCATGTCTGCCCTACAGGAG
3' ss Score
10.08
Exon sequences
Seq C1 exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
Seq A exon
GTAAGAGCCAACCCCTCATGTGTGGCCATGAGGGATTTATGTACAGAGCATCCCAGCACCAGTCCCACTCCCCTTCCAGAACTCCAGGCTATCTTACTCGTGAGCTCCTCAGTTTTGAAGGATCACAAGGGATCCAGAGAGCTGTCTTGGCTAGGCAAAAGCTCCTGGCGTCTTCTACTCATCCCTGGGCAAAAGTTGGCCCTGTGCCTGGCAGAGTCCCAGCCCTGTCCCTGAGCTGCTAGGGACTGATGTGAGGCTCCAGGCTGGGAGAGCCATGGCTCCCTTTGAGCTGGGGCTTGTGCTGCTTCTGCCCGCGTGATGCTTGTGCAGCTCCTTCACCTTTGAGGGAGCGGCAGTTAAGACTTGTAGTGATGTTTAGATAATGTATTACATGAACATCACTTTAAGTCTGTGCTACTTCTCTCCTCATTCTTGTCGGCGGGAAGGACAGCCTTTGGGCAGAAGAAAATGGAGGAGGCTCTAACGGGTCTCTGAGCGTGCAGCTCTGCTCTCCTGTCCATGGAGAGCTATGTGACAGCTCAGGATAACACGTGCCCCTAATCCCACGCTCACCATGGCATTTATTTGTCCATCCCAGAGTTCAATCAGCTGAAAAACAGAGAAATGTCTGTAATCCCAAAGCTGTGGCCTGCTGTGACCACCTTATGGTGGCAGGGTGTTCAAAGAGAGTCTTATTATCAGATACACCGAGAGCTCTGGTAGCCAAGGAGAGGTTCCTGGGGACAAGGTTCCTGAGCAAACCCCATTCAGGGAAGCATGTGGTGTTCTTTCTTCTGGACAACTCACAGTCCCTGGGAGGTGTTTGTGGTGAGAAGTATGGCTTGCCAGAGCTGGTCTTGGACTGGCTGAGCCTCTAAGGAGGAAAAGGCAACCTGGGAAAAAACAAGGATGCAAATGCTTTTCCCATAGGAAAAGGCAGGACTGAGCCATCCCAGGATCCAGGGCCTCTGGCAGTGCTCTACTGTATTCCCTTAATCCCAGGGGCTCACCTCCACTGTCCTGCCAGGGCATGCTGGTCTCCAAACAGATGTTCACAGAGCATCCCTCATGAGCCAGACCTGACACAAAGCTGCTGGAAGGATGGAGAAGGCTCAGGCTGGCCTGGCAGGACCCTCTGTCACAGCCAGAGGGCATGGGCAGCACTCTGGGGTACGAGGAAAATCCCTATTGAGATGAGGGCTGCAGTCTTGTGTTTCTGGCTCTTCCCTGTAGCAGAACTTTACTTACAAACACTTGTGAGGAACCTGACTCCTGTCTGGCACAGCAAAACCAGCACGTGCCAGTTGCCATGTCTGCCCACCATGGTTTCTCTGCTGTTGCACACACCTTGGCAGAAGGCAGTGGTGTTGCTATGGGCAGCAACGAGAGCAGTGAAGCAAGAGGAAATTCCCTCCCCTTCCCCCACCATGGGCAGTGTCTGCTCTCTCTGTGCCTGTGAGAGGAAGGAGCTGGAGAGAAGTGCTGTGGGAGCAGAGCCATTACCTCATGCCTCATCCCCCATGTCTGCCCTACAG
Seq C2 exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]