MmuINT0103614 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155622645-155623290:+
Coord C1 exon
chr2:155622645-155622721
Coord A exon
chr2:155622722-155623202
Coord C2 exon
chr2:155623203-155623290
Length
481 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTGCTCTCCCCATTCCCAGGAG
3' ss Score
9.86
Exon sequences
Seq C1 exon
CCGAGCCCCCCAAGTCTGGGGTGAAAGAGAAGCGCAAGAAAGCAGCATCATTTCAGACCGTGTCTCAGCTTCACAAG
Seq A exon
GTGAGGTCCAGACTGGGGTCCCAGCGGCCCTGGCTTTCTGCAGGCTGCCCCGCCCCCTAAGACTGCCACGCCCCCTACAGGCTGCCACGCCCCCTACAGGCTGCCACGCCCCCTGCAAGCTGCCACGCCCTCCTTGCTCCCTGCCGTCCCTGTGTCTTGGGTGGGCAGCTGTTAAGACTTGCAGTGATGTTTAGCTCCTCTGCATGTGAACATCACAGCAAGTCTGTGCTGCTGCCTGCCCCCATGCTGCCTGGGTAGGGCTGGGGGAAGGGGGAGCCATGGGACGGAGCCCTGGGGGTGGGGGGGCGGTGAAGACTTAGGTGGTGTTTGGGGTGGGGCAGGTGTCATAAGGAGCATTTGGGCTCCTCTGCCCAGTCCCCTCTGGTCCCTAACCACTGCGGCATGCAATTCTGGTTCTCTGACCCTCCTGTGCCTCTCCCTGCTCCTCCTGTGCCTCTCTCCCTGCTCTCCCCATTCCCAG
Seq C2 exon
GAGAACCTCAACAAGCTCATGACCAACCTGCGGGCCACACAGCCCCATTTCGTCCGCTGTATCGTCCCCAACGAGAACAAGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types