GgaINT0011575 @ galGal3
Intron Retention
Description
NA
Coordinates
chr20:9724029-9724633:+
Coord C1 exon
chr20:9724029-9724114
Coord A exon
chr20:9724115-9724492
Coord C2 exon
chr20:9724493-9724633
Length
378 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CTGGTTTTCATGTCTCTTTGCTC
3' ss Score
-1.73
Exon sequences
Seq C1 exon
GCGGAAAGAAAATGCAATTTGGAAGCTCCAGAATGCCTCCGATCTCGCTAAAAGCATTGCCCTTGGCCATGAACCTCCATCAAAAG
Seq A exon
GTAGAGAAGACATTCTCCATCCTCATACTGCAGTCCGTGCTGGCCAGGCAGGTGCCCTGGAGCTTCTCTGGGCCTTTGCCATGGGGGTTCTGCTCTCAGGCCAGGAGGTTTCCCTGTAAAGGGTTGGGGCAGCTGCTAGCCCAACAGAGTGCAGGTGGCAGAGGTGCAGGCTCCTGCTGGAGCAGGTGCAGCTCGGGTTTTATCCCTAGGACATGCAGAGAAGTCTCCTGGGTAGACCCTTTTGGCACGGGATGGGAATTACATTTGGATGCTCTTGTAATGGGGCTGCAATTGTTTGGAACCTGACACATCCTCCTGTTGAACTGCATGCGTGCTGTCTTCAGTAACCTTCTTTAAACTGGTTTTCATGTCTCTTTG
Seq C2 exon
CTCTAACAGTCACCAAGTCCAAAATCCTGCAGCAAAAATCCTTTGATCTCCCTGGCAGCCAAAGGAAGCTCAACCCAAGTCAGAACAAGGCTGTGCTAAATGCCTTAACAAAACCCTTCACGCTCATCCAAGGCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138:ENSGALT00000009906:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF130861=AAA_11=PU(10.0=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAAGAAAATGCAATTTGGA
R:
GGGCCTTGGATGAGCGTGAA
Band lengths:
222-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]