RnoINT0070093 @ rn6
Intron Retention
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176733378-176733872:-
Coord C1 exon
chr3:176733601-176733872
Coord A exon
chr3:176733510-176733600
Coord C2 exon
chr3:176733378-176733509
Length
91 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
ACCTACACCCCCCACCCCAGTAC
3' ss Score
3.56
Exon sequences
Seq C1 exon
CCGCAAGGAAGAAGCTGTGCGTGGACTGAAAAACGCATCCCCACTGGTCATTAGCATCGCCTTGGGCTTGCCGATCCTTGAGCCCCATTGGCCGATCCCTGAGCCCCGTCACCAGATATCCTGGCCCCGTCACCAGATATCCTGGCCCCGTCACCCAATATCTGGGCCCTGTCTCCCAGTATCTGGGCTCTGTCTCCCAGTATCCGGGCTCTGCCATCCAATCCCTGAGCCCTGTCGCCGCGGCTGGCCTCCCCAGCATTCTTCCCGCAAGG
Seq A exon
GTAGGTCTGCCCTTAGCTTTTCCACCTCTCCCCAGTGCATGGTGCTCAAATGACCCCATGGCTTCTGCTACACCTACACCCCCCACCCCAG
Seq C2 exon
TACCTACCAGCAGGTTCTTGGAGCGGAAGAACTACAACATCCCCGGTGGACATCATAAGCTGAACCAGAGCCAGGACAAGGCTGTCAGGAGTGCTCTGCAGAAGCAATTCACAGTCATCCAGGGCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267:ENSRNOT00000017787:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.622
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF130861=AAA_11=PU(13.4=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATCTGGGCCCTGTCTCCC
R:
CAGCTTATGATGTCCACCGGG
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]