GgaINT0011633 @ galGal4
Intron Retention
Gene
ENSGALG00000020939 | SLC35C2
Description
solute carrier family 35 member C2 [Source:RefSeq peptide;Acc:NP_001026036]
Coordinates
chr20:11074778-11075133:-
Coord C1 exon
chr20:11075070-11075133
Coord A exon
chr20:11074851-11075069
Coord C2 exon
chr20:11074778-11074850
Length
219 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
ATGTATTTTGGTCCTTACAGCTA
3' ss Score
8.63
Exon sequences
Seq C1 exon
CTTTGTCAACTTCCTTGGATATTGGGCTGAGTAACTGGAGCTTCCTGTATGTCACCGTCTCCCT
Seq A exon
GTGAGTACAAATCTCATCTTCCCTGGGTGTCCTCATGTGGGGTTTGGAAAGTGCTGCATTGGGGTCAGCATCTGGAGCGGCACGTGGCCCCGTGGGGTTGGCATGCAGGGGTTGTGTTGGGCTGTCTGGCAGCTGCATAACGCAGATCTCCTTCCTAATGGTGCTTCTCTGGGAAGGGCTGCATTGGAAGGTATTGATAATGTATTTTGGTCCTTACAG
Seq C2 exon
CTACACGATGACCAAATCCTCTGCCATTCTCTTCATCCTGTTGTTTTCATTGCTCTTCAAGCTGGAGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939:ENSGALT00000039096:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]