HsaINT0152593 @ hg38
Intron Retention
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35 member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr20:46355802-46356637:-
Coord C1 exon
chr20:46356574-46356637
Coord A exon
chr20:46355875-46356573
Coord C2 exon
chr20:46355802-46355874
Length
699 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GTGGGTAATTTTGCTTCCAGGTA
3' ss Score
6.76
Exon sequences
Seq C1 exon
CTCTGGCGACGGCGCTTGACGTGGGCTTGTCCAACTGGAGCTTCCTGTATGTCACCGTCTCGCT
Seq A exon
GTGAGTACTGGCCATGCCCTGCTGCCTCCCTTCAGGCTGAAGCTGTCTGTCTGTCCAGCGGGGTGTCTGCACACCCGGCTGCTAGGCCAGCCACTCCACCACTCTGGGACCAGCCCTTGCTCTCTCAGCCTCTCCCTGGCACCCAGCAGCTCTCCGGGAAGTCGCCAGCCTCTTCCGTAAGCCCAGCGCAGAGGAGATGCTGTGCCCACCTGCCAGGCAGCGTGGGGAAGCCAGGGAGCTCTCCCAGAACCCCATCATCAGAGCAGGGGAAGGCAGGCTGCAAGGCCACAGACAGGTGGCCACTGGTGGGTGGTACACGCAGCCGCAGCAGAGCCCTATGTGGCCTGGGGGCTACACAAGAGTTTCTTCTTCCCTCTGATGTTTTGCTTCAGAGAGCACTGTTCCTGCCTTCTTGTCCTCCTACTTCTCATCCTTCCTTCCCGCTCCTGGGCTCTGCCGAGGGTTAGGTAAAGAACAGGACTCAGGGAGCTCAACGTCAGACCTGTAACCTCTTCTCTCTGGTGATAACCAGAGGCCTCTTAGTCAGAGATTCCTTCTGATTAAAGGTCGCTTATCACTCAGATGACAGCCCAGCTCTGTTTGGTCATTTCGCTCAGTGATTTGTGCTCCTGCTCCTTTCTCGGTGATGGGTCTGAGCCCTGAGCTCCAGCAGTGCATTGTGGGTAATTTTGCTTCCAG
Seq C2 exon
GTACACAATGACCAAATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189:ENST00000543605:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(16.0=100)
A:
NA
C2:
PF0089215=EamA=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains