GgaINT0011770 @ galGal4
Intron Retention
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8209807-8210500:-
Coord C1 exon
chr20:8210401-8210500
Coord A exon
chr20:8209860-8210400
Coord C2 exon
chr20:8209807-8209859
Length
541 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
3' ss Seq
GTTCATCTTCCCCTCTCCAGGCT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGCTCCTGTGCATGTCGGGCATACGTTGAAGGCCCAGCTTGTGACAGATGCAAGCCCTTGTACTGGAACCTGACTCCAGATAACCCTTATGGCTGCACGA
Seq A exon
GTAAGGAAATGGCAAATGCACAACCCCAGAAAGTCCTTTCCGCACTGTAGTGGTACAAGGTTCAAACCCAAGCCAGTGGGGACCACCACTGTTTGATGGAAGTGATATCTTTCCTTCCCTCTTACCGTGAGATATGTCAGTGCTGGAGGTATCTGGGACACCTCTTGGAGAGAGGGAAGGCTAGAGGCTGGAGCTTTTTGCTTGGGGTGGAACACAGAACTTGTGCAATGAGTTGTGCCATTTTCAGCCCTCCCTGAAGACCTTGCACACTTAGACTTTCATGGCCCAATGCGAAGAAAAGTCTAGTGTCTTTGACAATTGTATCTGCAATGGAAACTCATGGTGCAACGGTAACTCAAATGGTAACAATGTCCAAAATGAAAAGTGTGCCCTTGTACAATGCTACCCTTTACTTGACCAGCTCCCAGGTCCTATTATCCCAGGCAGCGTCCTTTGGTATGGTGGGTAATGATCACCCATCACGCTTCTTCTCAGGTGCTGAATGCTCTTCTGACTTTCTTGTTCATCTTCCCCTCTCCAG
Seq C2 exon
GCTGCAAGTGTGAGACCAAGGGCACCATCAGTGGAATTGCAGAGTGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321:ENSGALT00000008535:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(31.4=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]