RnoINT0003542 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3803583-3804873:+
Coord C1 exon
chr18:3803583-3803682
Coord A exon
chr18:3803683-3804820
Coord C2 exon
chr18:3804821-3804873
Length
1138 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TACCCTCTTTACCTTCACAGAGT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GGTTACTGCCAGTGCAAGCTTCATGTTACAAGCCCTACATGTAGTGTCTGCAAACCACTATATTGGGATCTGGCCAAAGAAAACCCCCGTGGATGCTCAG
Seq A exon
GTAAGCTGCTGCATGCACTCTGCCATATCTTTCGGAGTTCTTGCTTCTTTATTTTTGCCTTCTCAGTAAATATATCATCCTCTCAGATAGTTTATCCCAACCATTTCCCCTCCTCTCCCCCATTCCTTCTAGCTGCCCACCACCTCCTTCCTTTCCCAGATTCACTCCTTCTCTGTTCCCTCTTTAGAAAAGAACAGGCCTCCAAGAGATAACAGCCAAGCAGGACTAGCAAGATACAATAAGACAAGGCAAAAAGGCCCTCATATCAAGGCTGGGTAGGGCAACCCAACATGAAGAAGAGTCTCAAGAGCAGGCAGAGAGTCAGAGAGACACCTGCCCCTGCTATTCGGAGTCCCAGAAAAACACCAAGCTTATCTCAATGACATATATGCAGAGGGCCTGGTGCAGACCCATGCAGGCCCTGTGTTTGCTACTTCAGTCTCTGTGAGCCCATGTGAGCCCTGCTTAGTTAGAAGTGGGGTGGAGTTTGAGCAGAAGGGATGGGTTTTGGTGGGCTATGTTAAGAGAGCTCTGTGTCAAACTAATTTGATTTGTTCAACATGTTGCTTTGGTGTCCCCCACCTCCATTCAGGGCAGAACTATCATTTTTGGGCAAAGATTTATCTATACTGTTTCCATTTGAATTTTGTTGTTTGGGAAGGCAGCTTCTTGATAAATACCTTTGAACTCTTTGCTTTTATAAACCACTCTTTCTGGATAAACTTTATTTTAATTTTAATGCACACAATATAACAATGACATGAGCCTACTGCATCGTTTATTTTGTACAATTATTAAAGCCAGGACAACAAGTAAAAACACCTAACAAGAGGTCTAAGTGAAATGACCAATCTTTAGGGCACGTCAACAATGACCTTGCCATTGGGGACATTTATAAACTCTGTGCTAGAATTGCCACAAGCTAGCCATCACTCTAGACGGATCGTGTTGATTGATCTGTCTACTGGCCCCAGAAAGCAATCCTGATCTGAGCCCAGCAGTGCAGAGGAATGTTGCTTAAGTCCACAGGAAATCCAACCACATGAGTTTTGTCGTAGGCATGTAATGTCCCTAGAGCCAGGGAACTGTCCTTGTATATATACCCCCTGGATCATAGATACCCTCTTTACCTTCACAG
Seq C2 exon
AGTGCCAATGCCATGAGGCAGGGACAGTGAGCGGGATTGGAGAGTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(60.8=91.2)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(31.4=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]