MmuINT0089442 @ mm9
Intron Retention
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12606774-12608093:+
Coord C1 exon
chr18:12606774-12606873
Coord A exon
chr18:12606874-12608040
Coord C2 exon
chr18:12608041-12608093
Length
1167 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACCCTCTTTCATTTTCACAGAGT
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGTTATTGTCAGTGCAAGCAGCATGTTGCAAGTCCTACATGTAGTGTCTGCAAACCATTATATTGGAATCTGGCCAAAGAAAACCCCCGTGGATGCTCAG
Seq A exon
GTAAGCTGTCTCATGTACTGCCACATCTTTTAGAATCCTTGCTTCTTTATTTTTGCCTTCCTAGTTCCAACATTGACAAGACAGCACTTCTTCTCCTTTTTATTGGAAATAGAGTCTTCTCTCAGATAATTTATCCCAACCAGTTCTCCCCCTTCACTCCTTCCAGCTCTCTGCCACCTCCACCTCCCCAGATTTACCCCTCCCCACCACTATGTTTCCTTTTTAGAAAAGAACAGGCCTCCAAGAGATAATAGCCAAACAGGACACAAAAGATACAATAAGACAAGGCAAAACAAAAAACAAAAAACAAACAAAATCCTTTCATATCAAGGCTGGATAAGGCAACCCACAGGAGGAAAAGAGTCTCAAGAGTAGGCAAAGAGTCAGAGACATACCTGCTCCTGCTATTAGGAGTCCCACAAAAACACCAAGCTAATCTCAATAACAAATACACAGAGGACCTGGTGCAGACCCATGCAGGCCCTGTGCTTGCTGCTTCAGTCTCTGTGAGCCCATGTGAGCCCTGCTTAGTTGATTCGGTAGGATATGTTAAGAGAGCTCTGTGTCAGACCAATTTGATTTGTTCCACATGCTGTATAATGCTTTGCTGTCCCCCACCTCCATCCAGGGCAGAACTGCTATTTTCAGGCAAAGATTTATCTATACTGTTTCCATTTGAATTTTATTATTTGAGAAGGCCTTTGAATTCTTTGTTTTTATAAACCACTCTTTCTGGCTAAATTTTCATTGTAATGTACATAATATAACAATTACATGTACCTACATCTTCATTTTATACAATTATTAAAGCCAGGATACCAAGTCAAAACACATAGCAAAAGGTCTAAGTAAAATGACCACCTTTAGGGCAAGAGTATATTTTTATTCAGGCACATCAATAATGACCTTGACGTTGGAAGCATTTATAAACTCTGTGCTGGAGTGGCCATAAACTAGCCATTACTCTAGACGGATTGTATTGATTGATCTGTCTACTAATCCCAGAAAGCAATCCTGATTTAGGCCCCAGCAGTGCAGGGTGAATGTTGCTTAAGTCCACAGGAAAGTCCTGTGAGCTTTGTTGTAGACATGTAATGTCCCTAGAGCCAGGGAACTACTGTTCTTGTACAGCCCCTGGATCATGGATACCCTCTTTCATTTTCACAG
Seq C2 exon
AGTGCCAGTGCCATGAAGCAGGGACATTGAGTGGAATTGGAGAGTGTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-Lama3:NM_010680:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(60.8=91.2)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(31.4=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: