GgaINT0011775 @ galGal3
Intron Retention
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7835619-7838685:-
Coord C1 exon
chr20:7838547-7838685
Coord A exon
chr20:7835762-7838546
Coord C2 exon
chr20:7835619-7835761
Length
2785 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCTTGTCCCTCCCGCTCCAGGTA
3' ss Score
10.74
Exon sequences
Seq C1 exon
CCCAAGGTAGTGGTGACTCTCAATGTGACCTCCCCCGACCTCTTCCGCCTCGTCTTCCGCTACGTCAGCCGGGGGTCCGCCATTGTTGAAGGGAGGGTCTCGGTCGTTGAGGAAGGAAAGTTTAATATTTGTGGCAACT
Seq A exon
GTAAGTGCATTTTTCACTTCTAGACTAACTCAGAGCATCCCACGCTGCGACACTGCTCCTCTGCCCCTTCTCCTGTCTGAGGTGTGACCGTCCCAGGTGTGCCCATCCTGAGTGTGCCCATCCCAGGTGGCTGGCCAGTGCCGTGCCATGGGATGGTGGGGAGGGGGAAGAGAGGCAGGCAGGCAGGCAGGTAGGCAGGTGGGTGAGGCTCCCCTGCAGAGCAGGTGAGTGGCCAGGAGCTGGCCTCCCAGTGACGTGTGCCCCATGTGCTTTTTTGCTTTTTGCAGAATAAAATCAGAGTCACTGTAAACGTGAAGGAGGCAGAGCTCTATCTGTTCCATGTCATCCTGAGGTATATTAATTCAGGAGGGGCCACAGTATATGGCAAAATTACAGCTTATCAGCCACGAAGGAGAGGTAAGGATCCCAGACTGCTCTGCTCCCCTGCACCATCGCCACCTCCTCCCCATTCCAGGCAACCTTCTACATCATCCTTTCCAGAAGACACTTCCATATGGCTTTATCTGTTTACCTTCCAACTCAAAGGCTGATTTGAGCCTATAGCCTCCTTTATTTAGCACAGCTGTAGAAAGCTGATCTCCAGTTCTGGGGCTACACATTGAGGACTGTTATCAGTCAGACTATTGTTGGATAAGGCTGCTGTACAACTAGATACAGTCTCTCCAGCAAGGGGCAGAGTCACCACAGCGCCTCAGGCAGAACTGAGCTGAGCTTCCACAAAACCAGAATCTGCCAAGTGCTGGCAATGGGATCCAAACTTTGGCAGCTGGATGCAGTCTTGGCAGCTACTCTGATGTGTGCAAGCTTGTCCTTGCTTTGTGCATCTCCTAAACCAGGCTGCTGGCATCACAGGCTTTGGAAGTGACTTGAAATTACATGTTATACTGGCAATGCACTCCAGTGATTAGCTTCTTACCAAGACAAAAGCTGCTGAAGAGGAAGAAGAGTAACTAAAAGGTGGCTGAACAAGCCTAGAGATCTGGACATCATTATTTTGGGAGTCAGTGTGAGCAGAATTGTGTGGGTGCAGACCTGAAGCCATGCAAATACCCTAGGGCACAGCTGGCTGATTGATTTTGCCTCTCTGTTAACCGTACAGCCACATTATCCTGCTGTACTTTCACAGTATGAGGTTGTTGACATCGGCAAATTAATTTATCCATATGTGAAGTTCTGTCCTCTTTCTTGAGTTGACATAGAAGATGTTTTGCTTTTGATCTGATATACAAAGTTTGAAATGCCAAGATTTGTTTTTTTGGAGGGGAAAAATAGCTGGTAATTTTAAGGCCAGCCATATTACACAGCAGAAAGCCAAGAGAAGCATGAATGACGCTCATGCTTGAGGATCCCACTGAAGGTCAGGAAGTATTTGAACTGTCCTGTCCAGCAGCAGAGCTAATTTGCCCCATGATGTGCTTCTCTCCTTGCTCAGAAGCAGCGTTTGATTTTTTTAGTGTTGAAAGGCAAACTGCCGGACTGCTACACCAGCAAAGGGATCCGGGAGAGCAGCTTCCTTCATAGGCTAAATTGGCCTGAGAAATGCTGGGCCGCCTTCTGCCTGGGTGGAATGGGCAAGCGGTAAAGGACAAGCAGCCTGGAAAGAAGATAAAAGGTCATATTTGACCATTTACTCTCTCTCTGTTTGAAGAAGATGAGCAAGATGTGGCTTGTGTAAAGGGAAGCCTTTTCCAAGCATATGGTTTACTGGCCAGTTTTTCCCACTCCACCTCCACAACCCGTCTGAGTTTGAGTTGTGTAATCTCTCAAAGGAGTCCTCTCAAACTTCAGCTCGTCGAGAAATCCGCCCTGTGACCTATTCAGGGAAGTCTCTTCATTCCTCACATCCTCACCTTTGCTTCCCATCTGAGAAAGTGAGAGCTTGGCCCCAGCTGAAGCCAGGCCGTTGCAGATCTAGCACACACGAGAAGAGGCTGATTCATCCCAGCAGCAGCAAAAGCCCTTGCTTTAGCTTCTGACCCCGTGCAATTTGCCTTGATGTCCATGCACCATACCGAGACAGCCAGCGTGTGACATTCTCCACTTCTTCATGTCATCTGCTCCCCATGCAGCCATACTCAGTGAATCCCTCTTAATCATGTGCTTAAAAACCCTCCTGAGACTGTGGGCAGGCACAGTCTGCTTCTAGATGCTCTTCTGTTTTTTCATTCAAAGTTAATGAATGGAATGGTTACAGAAATTTGTCAGCTGAGCCAAGGAGCTGTTTAGCTGCAATCCTGTTGGTTAAAATCATTATCTAAGTCTCAGTCTATGGCTGACAAGGACAGGAGCACAGATTGGGAGTCTGAGAGTATGCAAGAAGACAGTTAACTTGCCTGTGGACTTGGGATAAGAATATCCCTAAAGAAAAATGTATCTGGGCAATTCTTTTTGTCTGTCTTAAAATTAATTCTTCACAAATGAGTTCCTTTTCTAGCAGGAAGAATGCTCTTTGGCATGTAATACTCTGCGCTTTGCAGTCCAGGTATGCAGAGCACACTGTGAGAGCTGTGGATTAGTGTTAAGGATTACAGTGATTTTAATATTTTCCTCCTGCTAAGCTACCGAGTAGATTCTCAGAGCAGATGTCTCTATTACAGCTCACTGTGGGATTGTGGTGCATCTTACAGCAGCACCAAGAGAGCAGCGGCCCAGGGCTCCCTGCTGTGCTACAGAGCTGCTCTCCTGAGTGCAGCGTCTGATTTGCAGCCCCAGATTTTTCATCCCCCCCCAGTGCCTTCACAGCCTCTTGTCCCTCCCGCTCCAG
Seq C2 exon
GTACAGAGCAGAGCAAGCAGATTGTCTTTGCTCCCAGCACGGAGCCAGCCTTTGTCACCGTCCCCCAGAACAGCTTTGGGGAGCCCTTCGTACTCAACCCCAACACGTGGTCTCTGATTGTCGAAGCAGAGGGTGTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321:ENSGALT00000008535:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]