RnoINT0084008 @ rn6
Intron Retention
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175572323-175572784:-
Coord C1 exon
chr3:175572646-175572784
Coord A exon
chr3:175572466-175572645
Coord C2 exon
chr3:175572323-175572465
Length
180 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCTTGCCCTCTCCACCCCAGGCA
3' ss Score
9.3
Exon sequences
Seq C1 exon
CCCAGGATCGTGGCCAGGCTGAACGTGACCTCCCCTGACCTCTTTCGGCTGGTCTTCCGATATGTTAACCGTGGATCGACCAGCGTGAATGGGCAGGTCTCTGTTCGGGAAGAGGGCAAGTTTTCCAGCTGTACCAACT
Seq A exon
GTGAGTGGGGTCTTCTTACCCCTTCCTTTTCTACCCACACCTCCCAAGTCATGCGGGTGGTGGACCCGGCCTGTGTCACCTTCATCCTGGCCCCGTGGGAGGTGTATGTTATGTGGGTGAAGTGCAGACTCGGGGGTGGTCTGGGGACTGAGCCTGAGCATCTTGCCCTCTCCACCCCAG
Seq C2 exon
GCACAGAGCAGAGCCAGCCAGTGGCCTTCCCACCCAGCACAGAGCCTGCCTTTGTCACCGTGCCCCAGAGGGGCTTTGGGGAGCCCTTTGTGCTGAACCCCGGCACCTGGGCCTTGCTGGTTGAGGCTGAAGGTGTACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691:ENSRNOT00000081226:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTCCCCTGACCTCTTT
R:
CTTCAGCCTCAACCAGCAAGG
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]